DNA甲基化分析软件汇总

Tlexander

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https://www.biostars.org/p/164929/, ~& G% X4 |; v! S& d' z

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5 ~% j6 C/ N7 I6 {# M2 oBeadScan: Analysing data from Illumina BeadArrays$ h2 n3 [! ~$ s9 v2 h9 g0 K
BisReadMapper: Library-free methylation sequencing with bisulfite padlock
5 L5 V, J/ f( r$ lBRAT: Highly configurable and well-documented three‑letter bisulphite aligner0 G/ a; ]+ g0 t$ H3 z
BSMAP: Probably the most widely used wild-card bisulphite aligner
9 {$ e$ {. {% ^( pBSmooth is a pipeline for analyzing WGBS data: aligning, quality control, and identifying DMRs.0 E' @; o7 ~: ^- U
ComBat: R script for correcting known or suspected batch effects
% s& g+ s9 t5 TDMAP: differential methylation analysis package for RRBS and WGBS data." @% L" A( d; F/ Z4 ?$ h/ H8 ]. E
GenomeStudio: GenomeStudio Methylation Module v1.8
% K/ M+ P: D. V1 O: lGSNAP: Wild-card bisulphite aligner included in a widely used general-purpose
! e$ A$ M5 ?6 f( ^! aisva: R package for batch effect correction using an algorithm5 e, l" ?: Z3 Y- Q
MethylCoder: Three‑letter bisulphite aligner that can be used with either Bowtie and Bowtie2
+ t  x4 D. b  j2 umethylumi: R/Bioconductor package for Infinium data normalization
2 l+ E; L3 _2 S3 A& L6 K8 Hminfi: R/Bioconductor package for Infinium data normalization, analysis" w! K1 r4 u+ ?% q
Pash: Wild-card bisulphite aligner included in a general-purpose alignment tool
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RnBeads: R package providing a software pipeline for Infinium data normalization,# Z' q8 P6 v7 c3 g! {
RRBSMAP: Variant of BSMAP that is specialized on reduced-representation
& d+ V' U# c1 s5 B2 p5 J6 o: J& usegemehl: Wild-card bisulphite aligner included in a general-purpose alignment tool' s' @/ b( I: X+ I. X$ O/ j
SVA: R/Bioconductor package for correcting batch effects
, \* @: B, _! Y. _3 F. x1 [% LmethyLiftover: cross-platform DNA methylation data integration
/ y6 [) _- A( g* S) {' L! J, F* zdariober's methylation-cafe: https://github.com/dariober/bioinformatics-cafe- Q/ z- [5 a/ |- c. W% q" l) x% R: w

yeshch

顶一下！

gxbzjznn

这个很好，赞赞赞