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software introduction on DNA [复制链接]

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发表于 2009-11-15 20:42 |只看该作者 |正序浏览 |打印
I will introduce some softwares on DNA
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7 e; Z. k4 z5 Z1 ]( q1 w  m) x' ~1 jambw 1.12 q7 V7 t) r4 S" f2 U0 q
软件大小: 1,900K 5 l5 H- L0 N) z- {
软件语言: 英文 8 T$ |  G/ w; q: O( v; N% @
软件类别: DNA分析类+ u* ^  o0 a2 h/ o( f0 N  @6 J
运行环境: Win9x/Me/NT/2000/XP/2003
9 B+ Q- ]/ E: J5 K加入时间: 2009-7-14
6 E7 h, S6 x, B" h原始网站: Home Page
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JaMBW, the Java based Molecular Biologist's Workbench
+ j! ], `3 S  x* k; pThe programs and documentation that you will find hereby enclosed had been put together in order to try to give a free access to the exploitment of the most common bioinformatic operations that a molecular biologist currently has. The peculiar aspect of JaMBW, however, is to take advantage of the foremost developments in computer science in order to deliver information in a way simple to use. The latter includes, therefore, point-and-click, drag-and-drop, plug-and-play. Most of these requirements are met by the use of Java programming language conformant to the JDK1.02 specifications. To the user of these resources, however, the implementation details are of null interest.; c7 z2 e; W  D. e2 r7 k

! p+ R# |3 J- XJava语言是一个跨操作平台的语言,用该语言编写的软件,可以跨操作平台使用,只要这个系统有支持Java语言的环境即可。在Windows环境下,IE与Netscape 浏览器均支持Java 语言,所以用 Java语言编写的分子生物学软件JaMBW便是在浏览器下工作的。JaMBW是一个分子生物学软件包,功能包括:序列格式转换、求序列的补体序列与逆序列、将DNA序列翻译成蛋白序列、序列分析、 多序列比较、特征位点查找、3维分子结构查看、PCR引物设计、缓冲液设计等功能,包含了分子生物学研究常用的一些操作。JaMBW是一个非常出色的工具软件。版本号1.1。: r2 c7 Y" k6 Y& t6 C) t/ {
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发表于 2010-2-27 23:39 |只看该作者
不错

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发表于 2010-2-22 13:39 |只看该作者
那么多啊 支持一下哈

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发表于 2010-1-20 08:46 |只看该作者
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5 k1 g: l4 s, o& \' o. [- j3 u谢谢

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发表于 2009-11-30 21:24 |只看该作者
13  GenescanView1.2 8) E& J2 i7 o# y0 O
软件大小: 80K
% t, R' \% h' |软件语言: 英文
2 k3 v3 C) C. L* _2 S! P软件类别: DNA分析类
4 v# [* i  m: }9 H9 o运行环境: Win9x/Me/NT/2000/XP/2003
$ I6 Z) X! a' D  H" w$ v3 m. ^加入时间: 2009-4-27
8 h! c) I* v- o原始网站: Home Page 2 X6 l% w) v7 _& w  _: b

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GenscanView is a new software for PC, developed at CRIBI (University of Padova) by Davide Campagna.
# F6 A* W! c4 @. w; ^" gIt allows to visualize genescan files (.fsa format from ABI PRISM sequencers) and to view the exact peak size.
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6 T8 L+ I" n  I, v. _2 Z* l+ l7 T查看基因扫描(genescan)格式.fsa文件并计算峰大小的小软件,意大利University of Padova提供,两个软件均可使用,可能稍有不同。8 q% ~; w6 W' ]1 k" @6 `- v3 q

3 T0 M  j" H3 V: O" Vdownload
附件: 你需要登录才可以下载或查看附件。没有帐号?注册

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发表于 2009-11-30 21:11 |只看该作者
12 GenomePixelizer 2003.10.1版- F. Y! M' e" Y% x4 f
软件大小: 1800KB / h* S  n$ v* I* y
软件语言: 英文 $ y4 b) Z) b2 K0 a9 y% b9 v0 Q
软件类别: DNA分析类4 L' Z" p8 t7 J3 B. p( j- j
运行环境: Win9x/Me/NT/2000/XP/2003
: P" B. n( H: L8 U: Z* D2 P1 k加入时间: 2006-8-13+ j/ D' P' i' z5 M- r5 {: o
原始网站: Home Page
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GenomePixelizer was designed to help in visualizing the relationships between duplicated genes in genome(s) and to follow relationships between members of gene clusters. GenomePixelizer may be useful in the detection of duplication events in genomes, tracking the "footprints" of evolution, as well as displaying the genetic maps and other aspects of comparative genetics.% y/ m. C& L2 ?0 `, |/ [8 N% M3 `! Q
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GenomePixelizer may be considered a drawing tool that generates custom images of genomes out of the given set of genes. Each element on the picture has a physical address defined by coordinates (pixels), hence the name "GenomePixelizer".
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显示基因组中重复基因与基因簇成员之间的相互关系的软件。特别是检测基因组中的重复事件(duplicating events),追踪进化的“足迹”以及显示遗传图等。程序需先安装TCL/TK后(分别为2.5M与1.1M),才能执行。; M5 O% @7 ^; t
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附件: 你需要登录才可以下载或查看附件。没有帐号?注册

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发表于 2009-11-23 19:13 |只看该作者
11 ConsInspector 3.3  m& h  A! ]3 s$ \
软件大小: 3351K
' ~, }- W8 Q+ d% h/ W! \软件语言: 英文 9 t! U& O/ K' X
软件类别: DNA分析类
0 q+ i) ~+ G! t7 x% ~+ V# M5 Z7 i9 @* I运行环境: Win9x/Me/NT/2000/XP/2003
* k1 N& M6 Y. P2 |1 m2 u) k加入时间: 2007-10-224 o* x, h$ b2 z& p3 e' v
原始网站: Home Page   Z6 e, m- T  S& F, S
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  z& z6 e- i, G* q7 HThe program ConsInspector predicts potential binding sites in sequences of unlimited length by comparing candidates with predefined consensus descriptions of protein binding sites. These consensus descriptions produced by the program ConsInd consist of the length of the binding site and the individual conservation of each nucleotide position within the site (consensus profile).
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DNA蛋白结合位点预测识别软件。软件包括1996年8月的共有序列库(consensus library)。通过比较预先设定的共有序列库来识别预测共有序列。
' ?8 C0 \% m& S+ rdownload

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发表于 2009-11-23 19:11 |只看该作者
10  MeltCalc 2.0
7 E8 a' {7 \5 ]' W; ^9 X软件大小: 460KB
$ @, R  r1 I  J' C软件语言: 英文
( i+ `& A+ W7 ^软件类别: DNA分析类2 {" Q! V* }$ g5 ^( p/ a. K, y
运行环境: Win9x/Me/NT/2000/XP/2003 . K  [- K2 C  ^( W2 q& d( D
加入时间: 2006-8-13+ i+ ]' \0 |( Q5 w
原始网站: Home Page 4 [# a+ ~% F0 n* j9 W

: m* e4 C8 r; k4 N' R$ B8 lThe ultimate thermodynamic modelling spreadsheet for Excel? Ever been puzzled by non-functional Hyb-probes for the LightCycler?? Optimize your probes with thermodynamic knowledge!, m6 g4 ]; }3 q* R+ V! |% H
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自动计算DNA序列热力学数据的Excel电子表格宏软件。基于热力学计算,根据输入的核酸序列,自动计算热力学数据,融合温度(Tm),设计杂交探针。软件不支持引物设计,所以可与Prime3(引物设计)联合使用。使用手册,366K,PDF格式。注册费140欧元。

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发表于 2009-11-22 20:50 |只看该作者
Lasergene
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1 X" [/ u7 p( u; f( [- J6 }downlaod

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发表于 2009-11-22 20:35 |只看该作者
Lasergene and vectorNTI9 ?2 {: d0 r8 Q3 C  `5 F% I
carfan 发表于 2009-11-21 16:38

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. @0 T' ^" \0 ^+ v1 F" E( PvectorNTI7 u: b/ G3 a7 r- n$ Z7 ^  q
homepage+ T- \2 Y! _- {- R& w. z) z

. |- w& `+ J1 j$ G/ P0 P* TSpecial databases, repositories of DNA/RNA or protein molecules, enzymes, oligonucleotides, and gel markers, can be created and shared between several Vector NTI users on a network.
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Shared databases are not a replacement for local databases; each Vector NTI application still must have its own local database. The local database is used in all operations: construction, design, creation of viewers etc. The local database is also the place for storing private and temporary data.
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The main purpose of the shared database is to store common data. The only operations you can perform on shared databases are: ; ]* x: D8 F8 Z: d  [* j

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' b% s+ X  V+ Y9 M' OCopying data to/from the local database.
5 H' I/ g7 J% a% mVarious database management operations such as creating and deleting subsets, etc. : F8 T: O: p/ l- }! V8 D8 B0 \5 _
Database searches.
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For instance, you may copy some of your molecules and enzymes from your local database into the shared database. In order to use them in the design process, your colleague must copy them to his/her local database first. In addition to biological data, each database contains information about its creator and registered users. Only the creator and registered users can have access to database data. The database creator can also change database properties, remove registered users, and define the password required to become a register user. ) A/ g/ p- L! }9 v8 b
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Note: Vector NTI shared databases use portable data format and file naming conventions to ensure that both Macintosh and Windows users of Vector NTI can access common databases. Shared databases can be located on a wide range of file servers—Vector NTI can work using not only services native to each system, (Microsoft Network or AppleTalk) but also various Unix (NFS or Samba) and NetWare services.  4 J5 j) B* F+ q

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