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software introduction on DNA [复制链接]

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发表于 2009-11-22 20:35 |只看该作者
Lasergene and vectorNTI
1 r+ L- p* R0 X6 j) Z1 Y  ccarfan 发表于 2009-11-21 16:38
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, d4 a$ k% ^! h  K2 r" A7 S5 R( T% `* pvectorNTI
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Special databases, repositories of DNA/RNA or protein molecules, enzymes, oligonucleotides, and gel markers, can be created and shared between several Vector NTI users on a network.
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Shared databases are not a replacement for local databases; each Vector NTI application still must have its own local database. The local database is used in all operations: construction, design, creation of viewers etc. The local database is also the place for storing private and temporary data. " t1 r2 z3 j+ J! _
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The main purpose of the shared database is to store common data. The only operations you can perform on shared databases are:
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+ }4 _, b3 ~5 {0 T7 k0 YCopying data to/from the local database.
: C9 N. p( |$ }Various database management operations such as creating and deleting subsets, etc.
4 P5 {2 a9 f% \8 h, J3 M; wDatabase searches.
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* m* S$ u: d1 |& z9 I+ \+ KFor instance, you may copy some of your molecules and enzymes from your local database into the shared database. In order to use them in the design process, your colleague must copy them to his/her local database first. In addition to biological data, each database contains information about its creator and registered users. Only the creator and registered users can have access to database data. The database creator can also change database properties, remove registered users, and define the password required to become a register user.
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0 w: I& {- J& s" o2 X' s- RNote: Vector NTI shared databases use portable data format and file naming conventions to ensure that both Macintosh and Windows users of Vector NTI can access common databases. Shared databases can be located on a wide range of file servers—Vector NTI can work using not only services native to each system, (Microsoft Network or AppleTalk) but also various Unix (NFS or Samba) and NetWare services.  
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发表于 2009-11-22 20:50 |只看该作者
Lasergene
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downlaod

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发表于 2009-11-23 19:11 |只看该作者
10  MeltCalc 2.0
8 g/ C# N2 Q( f' P7 }4 q# N/ O软件大小: 460KB
! n7 N4 j( F& {% J1 A软件语言: 英文 / n( ^3 J$ ^- ]
软件类别: DNA分析类. Q/ |% l1 L2 i
运行环境: Win9x/Me/NT/2000/XP/2003   Z2 W. J# O# ?( [
加入时间: 2006-8-13$ w8 s5 ^+ z! Y* n; U# I5 R
原始网站: Home Page . v. H. R" g- W5 v" K, k
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The ultimate thermodynamic modelling spreadsheet for Excel? Ever been puzzled by non-functional Hyb-probes for the LightCycler?? Optimize your probes with thermodynamic knowledge!
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8 [2 [' x# e9 s6 |# b' J% Y; w自动计算DNA序列热力学数据的Excel电子表格宏软件。基于热力学计算,根据输入的核酸序列,自动计算热力学数据,融合温度(Tm),设计杂交探针。软件不支持引物设计,所以可与Prime3(引物设计)联合使用。使用手册,366K,PDF格式。注册费140欧元。

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发表于 2009-11-23 19:13 |只看该作者
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11 ConsInspector 3.3
$ S& D- l# i' w* L& _/ d, R4 v软件大小: 3351K, _( D# W& |1 Y8 j8 x: D1 p7 [* |3 A. f
软件语言: 英文
4 S9 M3 m2 B* }* f% R) r软件类别: DNA分析类8 y$ l4 u6 v: A% m
运行环境: Win9x/Me/NT/2000/XP/2003
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5 E9 A9 }8 L( u) tThe program ConsInspector predicts potential binding sites in sequences of unlimited length by comparing candidates with predefined consensus descriptions of protein binding sites. These consensus descriptions produced by the program ConsInd consist of the length of the binding site and the individual conservation of each nucleotide position within the site (consensus profile).' h' Q- s  r& h4 B% `) F
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DNA蛋白结合位点预测识别软件。软件包括1996年8月的共有序列库(consensus library)。通过比较预先设定的共有序列库来识别预测共有序列。
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发表于 2009-11-30 21:11 |只看该作者
12 GenomePixelizer 2003.10.1版
' Q5 \$ z1 M( t) }" _% ^软件大小: 1800KB
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运行环境: Win9x/Me/NT/2000/XP/2003 $ n9 ]6 {0 k- y6 l- c& i" M* \
加入时间: 2006-8-13
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' Z% p' `+ x) w7 V, P+ {  UGenomePixelizer was designed to help in visualizing the relationships between duplicated genes in genome(s) and to follow relationships between members of gene clusters. GenomePixelizer may be useful in the detection of duplication events in genomes, tracking the "footprints" of evolution, as well as displaying the genetic maps and other aspects of comparative genetics.
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GenomePixelizer may be considered a drawing tool that generates custom images of genomes out of the given set of genes. Each element on the picture has a physical address defined by coordinates (pixels), hence the name "GenomePixelizer". " ]. f6 ~2 j& l+ K  x

7 i0 O% j/ H+ a- t) I% D, d显示基因组中重复基因与基因簇成员之间的相互关系的软件。特别是检测基因组中的重复事件(duplicating events),追踪进化的“足迹”以及显示遗传图等。程序需先安装TCL/TK后(分别为2.5M与1.1M),才能执行。
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发表于 2009-11-30 21:24 |只看该作者
13  GenescanView1.2 82 g& W" U3 K) {) D$ I
软件大小: 80K6 v( K, h. S7 }; H2 v6 B
软件语言: 英文
# u2 L+ r5 {- R" e2 ?软件类别: DNA分析类
0 ]+ }5 S2 v, G, \( P6 U* q2 d运行环境: Win9x/Me/NT/2000/XP/2003
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原始网站: Home Page 0 `, u9 s3 q3 d2 H
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GenscanView is a new software for PC, developed at CRIBI (University of Padova) by Davide Campagna.3 O' L4 f4 I) R, b3 j+ B
It allows to visualize genescan files (.fsa format from ABI PRISM sequencers) and to view the exact peak size.3 i& q7 ^) ]( j. T6 [1 ?' a$ S
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查看基因扫描(genescan)格式.fsa文件并计算峰大小的小软件,意大利University of Padova提供,两个软件均可使用,可能稍有不同。
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download
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发表于 2010-1-20 08:46 |只看该作者
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谢谢

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发表于 2010-2-22 13:39 |只看该作者
那么多啊 支持一下哈

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发表于 2010-2-27 23:39 |只看该作者
不错
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