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一种用条件RNA干扰研究鼠基因功能的快速可扩展系统 [复制链接]

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楼主
发表于 2011-4-18 20:59 |只看该作者 |倒序浏览 |打印
本帖最后由 qianqianlaile 于 2011-4-18 20:59 编辑
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3 c8 ]$ }; K' A: p' M. XA Rapid and Scalable System for Studying Gene Function in Mice Using Conditional RNA Interference
& k1 C+ l, e% F  G) Z, v) R9 G6 NPrem K. Premsrirut1, 4, 8, Lukas E. Dow1, 8, Sang Yong Kim1, Matthew Camiolo1, 4, Colin D. Malone1, 2, Cornelius Miething1, Claudio Scuoppo1, 2, Johannes Zuber1, Ross A. Dickins1, 6, Scott C. Kogan7, Kenneth R. Shroyer5, Raffaella Sordella1, Gregory J. Hannon1, 3 and Scott W. Lowe1, 3, ,
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1 Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA' s: k6 R+ d# Q" t: v. y

( U. @$ @" q% \  T( J+ P2 g2 The Watson School of Biological Sciences, Cold Spring Harbor, NY 11724, USA# x# ]7 c3 _1 |9 E; P0 O

+ q/ O$ j; t$ [$ k1 c3 Howard Hughes Medical Institute, Cold Spring Harbor, NY 11724, USA! \  r$ Q- a6 r

/ x7 ?, c5 }/ F6 }2 q  [, f4 Medical Scientist Training Program, Stony Brook University Medical Center, Stony Brook, New York 11794, USA1 f5 N; V5 y! t8 Y9 N( B  @- }
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5 Department of Pathology, Stony Brook University Medical Center, Stony Brook, New York 11794, USA
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4 |- G2 y" ]- j6 Molecular Medicine Division, Walter & Eliza Hall Institute of Medical Research, Parkville 3052, Australia
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7 Helen Diller Family Comprehensive Cancer Center and Department of Laboratory Medicine, University of California, San Francisco, CA, USA1 F! }: B" [$ u

& q1 p3 N( s0 J5 C# UReceived 10 June 2010;  revised 17 December 2010;  accepted 5 March 2011.  Published: March 31, 2011.  Available online 31 March 2011. 9 q" }: ]# O, h# b

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RNA interference is a powerful tool for studying gene function, however, the reproducible generation of RNAi transgenic mice remains a significant limitation. By combining optimized fluorescence-coupled miR30-based shRNAs with high efficiency ES cell targeting, we developed a fast, scalable pipeline for the production of shRNA transgenic mice. Using this system, we generated eight tet-regulated shRNA transgenic lines targeting Firefly and Renilla luciferases, Oct4 and tumor suppressors p53, p16INK4a, p19ARF and APC and demonstrate potent gene silencing and GFP-tracked knockdown in a broad range of tissues in vivo. Further, using an shRNA targeting APC, we illustrate how this approach can identify predicted phenotypes and also unknown functions for a well-studied gene. In addition, through regulated gene silencing we validate APC/Wnt and p19ARF as potential therapeutic targets in T cell acute lymphoblastic leukemia/lymphoma and lung adenocarcinoma, respectively. This system provides a cost-effective and scalable platform for the production of RNAi transgenic mice targeting any mammalian gene.
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PaperClip
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2 V0 i+ B- V6 }2 V7 {Graphical Abstract$ J: s  _2 {( m" g* j& [& @/ `3 b3 @
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Highlights3 R. _$ ?, c5 I! X
► shRNA transgenics enable potent and reversible fluorescence-marked gene silencing ► Transgenic mouse production is fast, efficient, and scalable ► “Speedy” ES cells accelerate the evaluation of gene function in mouse models ► Reversible gene suppression can pinpoint pathways for therapeutic intervention( j: S: H; K) W# r3 N, D* y
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Article Outline
& s+ |* c8 v. o. V6 l1 e; _7 iIntroduction) T3 @2 I: n- C3 i# S0 F9 y5 P2 h7 c
Results
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Generation of a Targeting Construct
3 m2 h" i9 t( Q  [, [ColA1-Targeted shRNAs Enable Potent and Reversible Knockdown in ES Cells
  b8 H8 F/ |$ U7 Q; I  m6 iColA1-Targeted shRNAs Enable Potent and Reversible Gene Suppression In Vitro
+ E$ q: b! M* e' e: dTransgenic shRNAs Do Not Impair Normal MicroRNA Processing+ \9 W! U5 W$ N1 v" W! p
ColA1-Targeted shRNAs Enable Potent and Reversible Gene Suppression In Vivo
. V# q  N7 e1 fA Tet-Transactivator Line that Enables Efficient Knockdown in a Broad Range of Adult Tissues5 a/ p" r, d- ~: Q$ Z$ V
Studying Gene Function during Embryonic and Postnatal Development: Reversible and Irreversible Consequences of Hyperactive Wnt Signaling: d: Z1 t8 R( ]9 X5 L
Studying Gene Function in Disease Initiation and Maintenance: APC Suppression Is Required for the Initiation and Maintenance of T-ALL
5 r" x  c- T4 O  s7 C# e( aStudying Genetic Modifiers of Disease: p19ARF Suppression Promotes the Initiation and Maintenance of KrasG12D-Induced Lung Cancer0 B/ b  j( a& I. H& x3 T8 ]" C/ M
Accelerating the Analysis of Complex Models of Disease Using Conditional RNAi
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Experimental Procedures
: a* U: G0 q$ V3 L1 C6 N5 k7 zTargeting Constructs and ES Cell Targeting
+ e0 w* J) b  i: @- m7 U5 F: lTransgenic and Speedy Mice
' F% W* _, D. G( r! b* @% H; ]Alcian Blue and Alizarin Red Skeletal Staining
$ R  P, _4 q* E! N1 I  k% o+ f( ~: |Lymphoma Transplants and Monitoring
$ E7 w- I3 I7 {+ s7 }2 \& A! vCell Culture and Expression Analysis; Y8 i9 X' ~( K1 J* C8 ~1 n- k
RNA Extraction and Quantitative Real-Time PCR
3 x% n# j/ @2 t8 a: ?# E$ QLung Histopathology and Immunofluorescence
( o  w6 U+ ~+ a  q# }这篇文章是要付费的,所以摘要之外的部分只有提纲

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沙发
发表于 2011-4-18 22:03 |只看该作者
本帖最后由 qianqianlaile 于 2011-4-18 22:09 编辑 ) `0 T- x, A, E5 D0 S
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一种用条件RNA干扰研究鼠基因功能的快速可扩展系统" j9 b+ R4 ?4 I
Prem K. Premsrirut1, 4, 8, Lukas E. Dow1, 8, Sang Yong Kim1, Matthew Camiolo1, 4, Colin D. Malone1, 2, Cornelius Miething1, Claudio Scuoppo1, 2, Johannes Zuber1, Ross A. Dickins1, 6, Scott C. Kogan7, Kenneth R. Shroyer5, Raffaella Sordella1, Gregory J. Hannon1, 3 and Scott W. Lowe1, 3, , 9 \; O0 H4 J* L; B' |& \7 y; O: J7 ~9 U

# b$ @) c( Q# A6 Z* H; |+ Q1美国纽约11724,冷泉港,冷泉港实验室+ X% C3 {( J* q. |3 o: N( n
2美国纽约11724,冷泉港,沃森生物科学学院
& ?0 ~& ]6 N% s3 w; |4 ~3美国纽约11724,冷泉港,霍华德休斯医学研究所8 z+ V4 i4 F9 q' n  B# Z
4美国纽约11794,斯托尼布鲁克,斯托尼布鲁克大学医学中心,医学家培训计划
( Q8 |) L! A9 c" Q" @# H  h  O5美国纽约11794,斯托尼布鲁克,斯托尼布鲁克大学医学中心,病理科/ y' d' d+ S  [' U' b+ L
6澳大利亚Parkville 3052,华特-伊莉莎医学研究所,分子医学科
! M; y- w: Y$ A6 e# k. N( w  x7美国加利福尼亚,旧金山,加利福尼亚大学,海伦迪勒家庭综合癌症中心和实验室医学系3 t+ C" c2 c. H
收稿日期 2010-6-10  修稿日期2010-12-17  采用日期2011-3-5  发表2011-3-31  在线发表2011-3-31
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- |+ h$ x( |  g/ B0 O, {摘要
1 R3 i( i( S) J- W7 X; W0 l4 W! YRNA干扰是一种研究基因功能的强有力工具,然而RNA干扰的转基因小鼠的重复形成显著受限。通过用高效胚胎干细胞靶整合优化荧光耦合miR30为基础的小发夹RNA,我们建立了一种用于生产小发夹RNA转基因小鼠的快速可扩展管道。我们用这个系统生成了八种 tet-调节的小发夹RNA转基因系即体内广泛敲除Firefly和海肾荧光素酶、Oct4和肿瘤抑制基因p53, p16INK4a, p19ARF、APC、demonstrate 强大的基因沉默、GFP-tracked。进一步用一个小发夹RNA 作用于APC,我们阐明了这种方法如何为良好研究的基因鉴定预测表型及其功能。另外通过调节基因沉默,我们分别确认了T细胞急性淋巴细胞白血病/淋巴瘤和肺腺癌中潜在的治疗靶点APC/Wnt和p19ARF。不论其为何种哺乳动物基因转染,这个系统为RNA干扰转基因小鼠的生产提供了一个具有成本效益的可扩展平台。
( d5 `7 _+ D8 ?/ M纸夹  + _8 L/ ^; z8 P+ x* s
图形概要% |+ T3 V9 J" {* P0 W$ p7 ^

- W3 \) H$ u; Z$ {! n6 Q6 v  C* X本研究内容  W, Q/ b. B% Q/ J2 u1 I
►小发夹RNA 转基因能沉默强力可逆的荧光标记基因0 ?; D3 z# i' H5 X
► 转基因小鼠的生产是快速、有效并可扩展的. g; O1 G7 h; z/ m2 ^8 e# H! j
► “快的” 胚胎干细胞加速了鼠模型中基因功能的评估
* S" y5 d% D7 L: n& k; {►可逆抑制基因能探明基因干扰的途径
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文章概要- w, [# I0 m- M% r- A$ E* q5 _
引言/ {: y. [9 V1 R( N
结果
( e6 n8 h5 {+ m形成一个靶结构- m0 ^& X5 O, a( E8 u! _7 Q
ColA1作用的小发夹RNAs能增强和可逆胚胎干细胞中的敲除$ m( O/ s! p0 @- b8 J" E( r
ColA1作用的小发夹RNAs 能增强和抑制体外可逆基因
0 Y9 F4 [7 P' _7 k& ?, E7 G5 q+ v9 K转基因小发夹RNAs 不损害正常微RNA 步骤3 t7 l0 m5 V) ~' d
ColA1作用的小发夹RNAs 能增强和抑制体内可逆基因. J. G7 O0 Y. U' X0 t- {8 E1 H
一个广泛成人组织中能高效敲除的转录系) D; }% `7 G1 q6 H  T  }
胚胎和成体发育期间基因功能的研究:极度活跃的Wnt 信号的可逆和不可逆转的后果
* r. G0 [# L3 E# t% W- i致病及其维持中基因功能的研究:T-ALL的启动和维持要求抑制APC
- q/ u- {) {  Z. O' V% J疾病的遗传修饰研究: p19ARF的抑制促进KrasG12D致肺癌的启动和维持
( ?# k5 X' p/ c" G$ j6 A9 p7 S' T& ?用条件RNA干扰加速疾病的复杂模型分析7 P  v7 s0 L. K9 |
讨论' U1 ]: b  d5 i; J# X) C7 a
实验步骤) [9 c6 y2 m: I% R; Z1 [
靶构建和胚胎干细胞靶
" J" L0 n  x" m. z- P转基因和快速小鼠* a5 u5 |, s* J' W& y9 F! C2 ?
阿辛蓝染色和茜素红骨骼染色
: [* W' A* x8 K- X5 a! F; W淋巴瘤移植与监测" q. I1 s( n- z
细胞培养及表型分析0 Z* L* W+ s; E, H1 D
RNA 提取和定量现时聚合酶链式反应
# Z. ^2 M  k- {* o肺组织病理学和免疫荧光
; E+ P; B' j9 i1 y6 I3 U今天有事,呵呵,改天修改整理哈
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藤椅
发表于 2011-4-19 09:18 |只看该作者
很有看点' [& I5 `% j6 Y" e
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2 @2 ~' H% G/ v+ ?谢谢

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发表于 2011-4-19 09:32 |只看该作者
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Dr. Scott Lowe is the leading scientist in RNAi mouse model establishment. The point they addressed most is how to construct such a model rapid and scalable. And the answer they gave is to use tetraploid complementation based way to construct transgenic mice directly, not the typical pro-nucleus injection. In this manner, they can construct the transgenic model directly from a genetic modified ESCs, which can be either manipulated originally or from other disease model, making multi-allelic manipulation achievable. For the application, besides its technical advantage, the most important thing is the gene studied can be loss-of-function reversible, then allow us to study its function in a specific window of development.
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发表于 2011-4-19 13:20 |只看该作者
回复 jhu132llh 的帖子
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2 A7 P" B: {. b$ i上传该篇文献,大家共同学习
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