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上面的文献是下面list的一些+ m& ^) R$ C# {6 `1 L- Z9 ^
4 v/ L' H( V. L! k- @: r+ W(2008). Moving AHEAD with an international human epigenome project. Nature 454, 711-715.
% J" R, F+ m @7 H$ E& Y(2011). Correction for Tao et al., Lsh, chromatin remodeling family member, modulates genome-wide cytosine methylation patterns at nonrepeat sequences. Proc Natl Acad Sci U S A 108, 15535.1 M6 J4 M; ?+ `2 L. L8 O' |
Al-Delaimy, W.K., and Willett, W.C. (2011). Toenail nicotine level as a novel biomarker for lung cancer risk. Am J Epidemiol 173, 822-828.
9 b5 c& z# V8 K4 r& H% o& FAlcazar, O., Achberger, S., Aldrich, W., Hu, Z., Negrotto, S., Saunthararajah, Y., and Triozzi, P. (2011). Epigenetic regulation by decitabine of melanoma differentiation in vitro and in vivo. Int J Cancer.* L: x% F6 v8 W6 x7 G3 m, h
Ari, F., Napieralski, R., Ulukaya, E., Dere, E., Colling, C., Honert, K., Kruger, A., Kiechle, M., and Schmitt, M. (2011). Modulation of protein expression levels and DNA methylation status of breast cancer metastasis genes by anthracycline-based chemotherapy and the demethylating agent decitabine. Cell Biochem Funct.& V8 `; w- \$ K. w/ j& h5 ~) P
Badran, A.H., Furman, J.L., Ma, A.S., Comi, T.J., Porter, J.R., and Ghosh, I. (2011). Evaluating the global CpG methylation status of native DNA utilizing a bipartite split-luciferase sensor. Anal Chem 83, 7151-7157.% d8 M, v9 L+ F$ j4 Z
Bailey, V.J., Zhang, Y., Keeley, B.P., Yin, C., Pelosky, K.L., Brock, M., Baylin, S.B., Herman, J.G., and Wang, T.H. (2010). Single-tube analysis of DNA methylation with silica superparamagnetic beads. Clin Chem 56, 1022-1025.1 J' _; z! U1 P
Bartels, S.J., Spruijt, C.G., Brinkman, A.B., Jansen, P.W., Vermeulen, M., and Stunnenberg, H.G. (2011). A SILAC-Based Screen for Methyl-CpG Binding Proteins Identifies RBP-J as a DNA Methylation and Sequence-Specific Binding Protein. Plos One 6, e25884.
4 p7 L9 D( Y$ a7 mBedognetti, D., Balwit, J.M., Wang, E., Disis, M.L., Britten, C.M., Delogu, L.G., Tomei, S., Fox, B.A., Gajewski, T.F., Marincola, F.M., et al. (2011). SITC/iSBTc Cancer Immunotherapy Biomarkers Resource Document: Online resources and useful tools - a compass in the land of biomarker discovery. J Transl Med 9, 155.5 W+ F4 J; M, P8 r
Belinsky, S.A., Tessema, M., Willink, R., Do, K., Yu, Y.Y., Yu, W., Machida, E.O., Brock, M., van Neste, L., Stidley, C.A., et al. (2008). Promoter methylation of genes in and around the candidate lung cancer susceptibility locus 6q23-25. Cancer Res 68, 1707-1714.
8 k- j1 n8 {: ~: ]Bogdanovic, O., and Veenstra, G.J. (2011). Affinity-based enrichment strategies to assay methyl-CpG binding activity and DNA methylation in early Xenopus embryos. BMC Res Notes 4, 300.% `) }$ g* y j ~* v. J( Q
Browne, A.W., Leddon, J.L., Currier, M.A., Williams, J.P., Frischer, J.S., Collins, M.H., Ahn, C.H., and Cripe, T.P. (2011). Cancer screening by systemic administration of a gene delivery vector encoding tumor-selective secretable biomarker expression. Plos One 6, e19530.
. o: n- ^* {+ Y( |$ r5 T0 aBuckel, W., and Thauer, R.K. (2011). Dual Role of S-Adenosylmethionine (SAM(+) ) in the Methylation of sp(2) -Hybridized Electrophilic Carbons. Angew Chem Int Ed Engl.( N1 g) F! x0 F
Calabrese, R., Zampieri, M., Mechelli, R., Annibali, V., Guastafierro, T., Ciccarone, F., Coarelli, G., Umeton, R., Salvetti, M., and Caiafa, P. (2011). Methylation-dependent PAD2 upregulation in multiple sclerosis peripheral blood. Mult Scler.9 s- ?* q% z4 o3 M3 ^; f( o/ z+ D6 R1 j
Callinan, P.A., and Feinberg, A.P. (2006). The emerging science of epigenomics. Hum Mol Genet 15 Spec No 1, R95-101.
- W! _' c3 D! \3 U! [- YCano-Herrera, M.A., and Miranda, L.D. (2011). Expedient entry to the piperazinohydroisoquinoline ring system using a sequential Ugi/Pictet-Spengler/reductive methylation reaction protocol. Chem Commun (Camb) 47, 10770-10772.* Q W: I9 V- m8 l
Castresana, J.S., Lorente, A., Mueller, W., Urdangarin, E., Lazcoz, P., Lass, U., and von Deimling, A. (2009). RASSF1A, BLU, NORE1A, PTEN and MGMT Expression and Promoter Methylation in Gliomas and Glioma Cell Lines and Evidence of Deregulated Expression of de novo DNMTs. Brain Pathol 19, 279-292.
- F" b( q. g m/ _7 w. ~Chang, A.Y., and Liao, B.Y. (2011). DNA Methylation Rebalances Gene Dosage after Mammalian Gene Duplications. Mol Biol Evol.; E& g9 G2 h. w3 c' C8 Q
Cheng, H., Zhang, L., Cogdell, D.E., Zheng, H., Schetter, A.J., Nykter, M., Harris, C.C., Chen, K., Hamilton, S.R., and Zhang, W. (2011). Circulating plasma MiR-141 is a novel biomarker for metastatic colon cancer and predicts poor prognosis. Plos One 6, e17745.
q& k: P8 R. @ `9 t, l1 f1 jChiam, K., Centenera, M.M., Butler, L.M., Tilley, W.D., and Bianco-Miotto, T. (2011). GSTP1 DNA Methylation and Expression Status Is Indicative of 5-aza-2'-Deoxycytidine Efficacy in Human Prostate Cancer Cells. Plos One 6, e25634.
4 {" N7 d* m6 RChim, C.S., Liang, R., Fung, T.K., Choi, C.L., and Kwong, Y.L. (2007). Epigenetic dysregulation of the death-associated protein kinase/p14/HDM2/p53/Apaf-1 apoptosis pathway in multiple myeloma. J Clin Pathol 60, 664-669.
; g+ F0 O g7 A% ^5 I( P8 G# H: RChristoph, F., Kempkensteffen, C., Weikert, S., Kollermann, J., Krause, H., Miller, K., Schostak, M., and Schrader, M. (2006). Methylation of tumour suppressor genes APAF-1 and DAPK-1 and in vitro effects of demethylating agents in bladder and kidney cancer. Brit J Cancer 95, 1701-1707.
! B$ i R* w r4 u3 A+ C0 p$ [1 {Cima, I., Schiess, R., Wild, P., Kaelin, M., Schuffler, P., Lange, V., Picotti, P., Ossola, R., Templeton, A., Schubert, O., et al. (2011). Cancer genetics-guided discovery of serum biomarker signatures for diagnosis and prognosis of prostate cancer. Proc Natl Acad Sci U S A 108, 3342-3347.% i7 V1 |/ b$ {3 B* H
Claus, R., Hackanson, B., Poetsch, A.R., Zucknick, M., Sonnet, M., Blagitko-Dorfs, N., Hiller, J., Wilop, S., Brummendorf, T.H., Galm, O., et al. (2011). Quantitative analyses of DAPK1 methylation in AML and MDS. Int J Cancer.4 N0 W) L7 u/ e `
Coolen, M.W., Statham, A.L., Gardiner-Garden, M., and Clark, S.J. (2007). Genomic profiling of CpG methylation and allelic specificity using quantitative high-throughput mass spectrometry: critical evaluation and improvements. Nucleic Acids Res 35, e119.
* X, l- u! h* U# b) HCoolen, M.W., Statham, A.L., Qu, W., Campbell, M.J., Henders, A.K., Montgomery, G.W., Martin, N.G., and Clark, S.J. (2011). Impact of the genome on the epigenome is manifested in DNA methylation patterns of imprinted regions in monozygotic and dizygotic twins. Plos One 6, e25590.
2 T- c7 W; A$ ~; KCortese, R., Lewin, J., Backdahl, L., Krispin, M., Wasserkort, R., Eckhardt, F., and Beck, S. (2011). Genome-wide screen for differential DNA methylation associated with neural cell differentiation in mouse. Plos One 6, e26002.! f, y- f. |* ]
Dahiya, R., Kawamoto, K., Hirata, H., Kikuno, N., Tanaka, Y., and Nakagawa, M. (2008). DNA methylation and histone modifications cause silencing of Wnt antagonist gene in human renal cell carcinoma cell lines. Int J Cancer 123, 535-542.: S7 Y3 S* e, P/ b, W1 T
Daibata, M., Taniguchi, A., Nemoto, Y., Yokoyama, A., Kotani, N., Imai, S., and Shuin, T. (2008). Promoter methylation of the bone morphogenetic protein-6 gene in association with adult T-cell leukemia. Int J Cancer 123, 1824-1831." b2 V0 A& C8 U/ z
Datta, A., Adelson, M.E., Mogilevkin, Y., Mordechai, E., Sidi, A.A., and Trama, J.P. (2011). Oncoprotein DEK as a tissue and urinary biomarker for bladder cancer. Bmc Cancer 11, 234.( i) C0 l) @/ @
Davalos-Salas, M., Furlan-Magaril, M., Gonzalez-Buendia, E., Valdes-Quezada, C., Ayala-Ortega, E., and Recillas-Targa, F. (2011). Gain of DNA methylation is enhanced in the absence of CTCF at the human retinoblastoma gene promoter. Bmc Cancer 11, 232.
6 C3 N/ _) Z2 q5 w5 |/ s7 t1 J& KDe Oliveira, N.F., Andia, D.C., Planello, A.C., Pasetto, S., Marques, M.R., Nociti Jr, F.H., Line, S.R., and De Souza, A.P. (2011). TLR2 and TLR4 gene promoter methylation status during chronic periodontitis. J Clin Periodontol.- v* _5 R6 n5 v" Q9 ]" O
DeJong, J., Xie, W.S., Han, S.Y., and Khan, M. (2002). Regulation of ALF gene expression in somatic and male germ line tissues involves partial and site-specific patterns of methylation. J Biol Chem 277, 17765-17774.
9 ~1 V% E; h* ]Delmas, A.L., Riggs, B.M., Pardo, C.E., Dyer, L.M., Darst, R.P., Izumchenko, E.G., Monroe, M., Hakam, A., Kladde, M.P., Siegel, E.M., et al. (2011). WIF1 is a frequent target for epigenetic silencing in squamous cell carcinoma of the cervix. Carcinogenesis.7 t! k; [0 i; U$ h. k+ o
Dent, S.Y.R., Coombes, M.M., Briggs, K.L., Bone, J.R., Clayman, G.L., and El-Naggar, A.K. (2003). Resetting the histone code at CDKN2A in HNSCC by inhibition of DNA methylation. Oncogene 22, 8902-8911.# L; [/ i( U7 L$ _3 M! P
El-Naggar, A.K., Lee, E.S., Issa, J.P., Roberts, D.B., Williams, M.D., Weber, R.S., and Kies, M.S. (2008). Quantitative promoter hypermethylation analysis of cancer-related genes in salivary gland carcinomas: Comparison with methylation-specific PCR technique and clinical significance. Clin Cancer Res 14, 2664-2672.2 i2 A$ \& E4 [( A
Espada, J., Peinado, H., Lopez-Serra, L., Setien, F., Lopez-Serra, P., Portela, A., Renart, J., Carrasco, E., Calvo, M., Juarranz, A., et al. (2011). Regulation of SNAIL1 and E-cadherin function by DNMT1 in a DNA methylation-independent context. Nucleic Acids Res.) F7 l1 m! i/ F# n0 B0 {$ W' C
Essex, M.J., Thomas Boyce, W., Hertzman, C., Lam, L.L., Armstrong, J.M., Neumann, S.M., and Kobor, M.S. (2011). Epigenetic Vestiges of Early Developmental Adversity: Childhood Stress Exposure and DNA Methylation in Adolescence. Child Dev.
! x5 C& N0 A9 v5 E( `Fan, X.Y., Hu, X.L., Han, T.M., Wang, N.N., Zhu, Y.M., Hu, W., Ma, Z.H., Zhang, C.J., Xu, X., Ye, Z.Y., et al. (2011). Association between RUNX3 promoter methylation and gastric cancer: a meta-analysis. Bmc Gastroenterol 11, 92.
. y8 W; B; B& S7 g; z3 NFang Lim, S., Karpusenko, A., Sakon, J.J., Hook, J.A., Lamar, T.A., and Riehn, R. (2011). DNA methylation profiling in nanochannels. Biomicrofluidics 5, 34106-341068.7 {6 T1 O, ?: ]0 Y
Feng, Q., Hawes, S.E., Stern, J.E., Wiens, L., Lu, H., Dong, Z.M., Jordan, C.D., Kiviat, N.B., and Vesselle, H. (2008). DNA methylation in tumor and matched normal tissues from non-small cell lung cancer patients. Cancer Epidemiol Biomarkers Prev 17, 645-654.9 s+ U& ?) v7 R# i' X( s
Flower, K., Thomas, D., Heather, J., Ramasubramanyan, S., Jones, S., and Sinclair, A.J. (2011). Epigenetic Control of Viral Life-Cycle by a DNA-Methylation Dependent Transcription Factor. Plos One 6, e25922.* ]1 K' C. i9 p( j; x
Frohlich, H. (2011). Network based consensus gene signatures for biomarker discovery in breast cancer. Plos One 6, e25364.
' s7 s6 V& Y' W2 H1 cFukui, H., Karibe, T., Sekikawa, A., Shiratori, K., and Fujimori, T. (2008). EXTL3 promoter methylation down-regulates EXTL3 and heparan sulphate expression in mucinous colorectal cancers. J Pathol 216, 32-42.
/ m6 P8 a- ~. g) k! J/ [Furukawa, T., Kawazoe, J., Zhang, W., Nishimine, T., Tokunaga, E., Matsumoto, T., Shiro, M., and Shibata, N. (2011). Asymmetric Allylic Monofluoromethylation and Methylation of Morita-Baylis-Hillman Carbonates with FBSM and BSM by Cooperative Cinchona Alkaloid/FeCl(2) Catalysis. Angew Chem Int Ed Engl.
R# j* y I% U! t) x" lGao, F., Luo, Y., Li, S., Li, J., Lin, L., Nielsen, A.L., Sorensen, C.B., Vajta, G., Wang, J., Zhang, X., et al. (2011). Comparison of Gene Expression and Genome-Wide DNA Methylation Profiling between Phenotypically Normal Cloned Pigs and Conventionally Bred Controls. Plos One 6, e25901.4 w( _, B2 z; P7 v
Garber, K. (2006). Momentum building for human epigenome project. J Natl Cancer Inst 98, 84-86.
/ O9 Q$ S# W$ @, JGazdar, A.F., Shigematsu, H., Suzuki, M., Takahashi, T., Miyajima, K., Toyooka, S., Shivapurkar, N., Tomlinson, G.E., Mastrangelo, D., Pass, H.I., et al. (2005a). Aberrant methylation of HIN-1 (high in normal-1) is a frequent event in many human malignancies. Int J Cancer 113, 600-604.
p, i6 j0 O( ~# x4 wGazdar, A.F., Shivapurkar, N., Toyooka, S., Toyooka, K.O., Reddy, J., Miyajima, K., Suzuki, M., Shigematsu, H., Takahashi, T., Parikh, G., et al. (2004). Aberrant methylation of trail decoy receptor genes is frequent in multiple tumor types. Int J Cancer 109, 786-792.0 V, C8 k$ i( r; n. Q
Gazdar, A.F., Takahashi, T., Suzuki, M., Shigematsu, H., Shivapurkar, N., Echebiri, C., Nomura, M., Stastny, V., Augustus, M., Wu, C.W., et al. (2005b). Aberrant methylation of Reprimo in human malignancies. Int J Cancer 115, 503-510.
# H' Y3 m5 ]! x; P6 i* i8 n7 FGazdar, A.F., Toyooka, S., Carbone, M., Toyooka, K., Bocchetta, M., Shivapurkar, N., and Minna, J.D. (2002). Progressive aberrant methylation of the RASSF1A gene in simian virus 40 infected human mesothelial cells. Oncogene 21, 4340-4344.- ]* [8 M: U8 T
Halsted, C.H., and Medici, V. (2012). Aberrant hepatic methionine metabolism and gene methylation in the pathogenesis and treatment of alcoholic steatohepatitis. Int J Hepatol 2012, 959746.
$ n1 c1 t3 P" {5 P& h! tHattori, N., Okochi-Takada, E., Kikuyama, M., Wakabayashi, M., Yamashita, S., and Ushijima, T. (2011). Methylation silencing of angiopoietin-like 4 in rat and human mammary carcinomas. Cancer Sci 102, 1337-1343.
. o6 ?+ T7 g+ A, t! N* R2 sHickman, M.J., Petti, A.A., Ho-Shing, O., Silverman, S., McIsaac, R.S., Lee, T.A., and Botstein, D. (2011). Coordinated regulation of sulfur and phospholipid metabolism reflects the importance of methylation in the growth of yeast. Mol Biol Cell.9 o4 D2 X! E# s7 M: c2 O0 X1 j9 F% |
Holz-Schietinger, C., Matje, D.M., Flexer Harrison, M., and Reich, N.O. (2011). Oligomerization of DNMT3A controls the mechanism of de novo DNA methylation. J Biol Chem.) H1 \' M- R d% u! s, B; s
Hung, W.C., Chang, H.C., and Cho, C.Y. (2007). Downregulation of RECK by promoter methylation correlates with lymph node metastasis in non-small cell lung cancer. Cancer Sci 98, 169-173." Z0 Y: L! f. C) @+ T' a
Huo, Q., Colon, J., Cordero, A., Bogdanovic, J., Baker, C.H., Goodison, S., and Pensky, M.Y. (2011). A facile nanoparticle immunoassay for cancer biomarker discovery. J Nanobiotechnology 9, 20.
8 ^9 z8 e! r1 ^" }0 M Z8 dIkeda, T., Furukawa, S., Nakamura, J., Sasaki, M., and Sasaki, T. (2011). CpG Methylation in the Hexamerin 110 Gene in the European Honeybee, Apis mellifera. J Insect Sci 11, 74.
Z+ O8 J7 a0 Y! U8 IIsagawa, T., Nagae, G., Shiraki, N., Fujita, T., Sato, N., Ishikawa, S., Kume, S., and Aburatani, H. (2011). DNA methylation profiling of embryonic stem cell differentiation into the three germ layers. Plos One 6, e26052.
0 S! [2 P9 {2 G' f; w$ K" Q' u: BIto, G., Uchiyama, M., Kondo, M., Mori, S., Usami, N., Maeda, O., Kawabe, T., Hasegawa, Y., Shimokata, K., and Sekido, Y. (2004). Kruppel-like factor 6 is frequently down-regulated and induces apoptosis in non-small cell lung cancer cells. Cancer Res 64, 3838-3843.. J# z0 K% f+ g D% Q5 S( x
Jin, B., Li, Y., and Robertson, K.D. (2011). DNA Methylation: Superior or Subordinate in the Epigenetic Hierarchy? Genes Cancer 2, 607-617.
. ^5 P' L( d0 g( R) TJones, P.A., and Martienssen, R. (2005). A blueprint for a Human Epigenome Project: the AACR Human Epigenome Workshop. Cancer Res 65, 11241-11246. D) ^7 p& Z$ y# l P, `9 f
Jung, A.Y., Smulders, Y., Verhoef, P., Kok, F.J., Blom, H., Kok, R.M., Kampman, E., and Durga, J. (2011). No effect of folic Acid supplementation on global DNA methylation in men and women with moderately elevated homocysteine. Plos One 6, e24976." U! ~7 a* {: Q& {( A# U X
Kato, D., Goto, K., Fujii, S.I., Takatsu, A., Hirono, S., and Niwa, O. (2011). Electrochemical DNA Methylation Detection for Enzymatically Digested CpG Oligonucleotides. Anal Chem.1 G& w. C8 O* l) o3 x# ?7 k
Kawakami, K., Matsunoki, A., Kaneko, M., Saito, K., Watanabe, G., and Minamoto, T. (2011). Long interspersed nuclear element-1 hypomethylation is a potential biomarker for the prediction of response to oral fluoropyrimidines in microsatellite stable and CpG island methylator phenotype-negative colorectal cancer. Cancer Sci 102, 166-174.. b+ M) s- A3 t9 Y. t% j3 N
Kay, P., Schlossmacher, G., Matthews, L., Sommer, P., Singh, D., White, A., and Ray, D. (2011). Loss of glucocorticoid receptor expression by DNA methylation prevents glucocorticoid induced apoptosis in human small cell lung cancer cells. Plos One 6, e24839.
8 j. e5 y3 p) W; d: s XKirectepe, A.K., Kasapcopur, O., Arisoy, N., Celikyapi Erdem, G., Hatemi, G., Ozdogan, H., and Tahir Turanli, E. (2011). Analysis of MEFV exon methylation and expression patterns in familial Mediterranean fever. Bmc Med Genet 12, 105.
& G1 ~- o# ]* o5 A7 aKooren, J.A., Rhodus, N.L., Tang, C., Jagtap, P.D., Horrigan, B.J., and Griffin, T.J. (2011). Evaluating the potential of a novel oral lesion exudate collection method coupled with mass spectrometry-based proteomics for oral cancer biomarker discovery. Clin Proteomics 8, 13.
2 L7 i; E3 v, l+ N3 K" d/ JKristensen, L.S., Wojdacz, T.K., Thestrup, B.B., Wiuf, C., Hager, H., and Hansen, L.L. (2009). Quality assessment of DNA derived from up to 30 years old formalin fixed paraffin embedded (FFPE) tissue for PCR-based methylation analysis using SMART-MSP and MS-HRM. Bmc Cancer 9, 453.
( ?% j( A% |8 }( C9 ?Kubo, T., Toyooka, S., Tsukuda, K., Sakaguchi, M., Fukazawa, T., Soh, J., Asano, H., Ueno, T., Muraoka, T., Yamamoto, H., et al. (2011). Epigenetic silencing of microRNA-34b/c plays an important role in the pathogenesis of malignant pleural mesothelioma. Clin Cancer Res 17, 4965-4974.
& ^& u9 f" K3 d0 w# YKumar, A., Rai, P.S., Upadhya, R., Vishwanatha, Shama Prasada, K., Satish Rao, B.S., and Satyamoorthy, K. (2011). gamma-radiation induces cellular sensitivity and aberrant methylation in human tumor cell lines. Int J Radiat Biol.+ ?& u( d2 P! b* q
Kuo, Y.B., Chan, C.C., Chang, C.A., Fan, C.W., Hung, R.P., Hung, Y.S., Chen, K.T., Yu, J.S., Chang, Y.S., and Chan, E.C. (2011). Identification of phospholipid scramblase 1 as a biomarker and determination of its prognostic value for colorectal cancer. Mol Med 17, 41-47.. s$ ?, K& A+ V5 c
Lee, H.J., Hinshelwood, R.A., Bouras, T., Gallego-Ortega, D., Valdes-Mora, F., Blazek, K., Visvader, J.E., Clark, S.J., and Ormandy, C.J. (2011a). Lineage Specific Methylation of the Elf5 Promoter in Mammary Epithelial Cells. Stem Cells.
' w! Y% R+ F" I1 |, p4 ULee, J.S., Kim, Y., Bhin, J., Shin, H.J., Nam, H.J., Lee, S.H., Yoon, J.B., Binda, O., Gozani, O., Hwang, D., et al. (2011b). Hypoxia-induced methylation of a pontin chromatin remodeling factor. Proc Natl Acad Sci U S A 108, 13510-13515.
2 T# q- c4 e! X+ x; |. b% U3 G: K0 VLi, W., Li, X., Wang, W., Tan, Y., Yi, M., Yang, J., McCarthy, J.B., Xiong, W., Wu, M., Ma, J., et al. (2011). NOR1 is an HSF1- and NRF1-regulated putative tumor suppressor inactivated by promoter hypermethylation in nasopharyngeal carcinoma. Carcinogenesis 32, 1305-1314.% I% t9 B* T+ F
Lin, C.T., Torng, P.L., Lin, C.W., Chan, M.W.Y., Yang, H.W., and Huang, S.C. (2009). Promoter methylation of IGFBP-3 and p53 expression in ovarian endometrioid carcinoma. Mol Cancer 8.) n9 V7 V. D; I: Q$ K* X
Lind, G.E., Danielsen, S.A., Ahlquist, T., Merok, M.A., Andresen, K., Skotheim, R.I., Hektoen, M., Rognum, T.O., Meling, G.I., Hoff, G., et al. (2011a). Identification of an epigenetic biomarker panel with high sensitivity and specificity for colorectal cancer and adenomas. Mol Cancer 10, 85.
& r, E9 w+ B: N- N. V0 Q8 wLind, G.E., Raiborg, C., Danielsen, S.A., Rognum, T.O., Thiis-Evensen, E., Hoff, G., Nesbakken, A., Stenmark, H., and Lothe, R.A. (2011b). SPG20, a novel biomarker for early detection of colorectal cancer, encodes a regulator of cytokinesis. Oncogene 30, 3967-3978.8 U9 }9 H# g+ g
Liu, F., Liu, Q., Yang, D., Bollag, W.B., Robertson, K., Wu, P., and Liu, K. (2011a). Verticillin A Overcomes Apoptosis Resistance in Human Colon Carcinoma through DNA methylation dependent Upregulation of BNIP3. Cancer Res.2 {9 V0 ~7 g. e/ d
Liu, H., Su, J., Li, J., Lv, J., Li, B., Qiao, H., and Zhang, Y. (2011b). Prioritizing cancer-related genes with aberrant methylation based on a weighted protein-protein interaction network. Bmc Syst Biol 5, 158.8 q1 A$ [1 @ K% l* [) X
Lleo, A., Liao, J., Invernizzi, P., Zhao, M., Bernuzzi, F., Ma, L., Lanzi, G., Ansari, A.A., Coppel, R.L., Zhang, P., et al. (2011). IgM levels inversely correlate with cd40l promoter methylation in patients with primary biliary cirrhosis Hepatology-Ana lleo library 4-26. Hepatology.7 @" {3 d7 {. M: A# @: M
Lopez Torres, A., Yanez Barrientos, E., and Wrobel, K. (2011). Selective derivatization of cytosine- and methylcytosine moieties with 2-bromoacetophenone for sub-microgram DNA methylation analysis by reversed phase HPLC with spectrofluorimetric detection. Anal Chem." N% _7 ?) a( j) k9 C% p! @
Lu, R., Sun, M., Feng, J., Gao, X., and Guo, L. (2011). Myofibrillogenesis regulator 1 (MR-1) is a novel biomarker and potential therapeutic target for human ovarian cancer. Bmc Cancer 11, 270.
* k& M/ S( z& n1 C6 K0 Y; H4 OMa, D.L., Shao, L., Cui, Y., Li, H.Y., Liu, Y., Zhao, H.S., Wang, Y., Zhang, Y.M., Ng, K.M., Han, W.L., et al. (2007). CMTM5 exhibits tumor suppressor activities and is frequently silenced by methylation in carcinoma cell lines. Clin Cancer Res 13, 5756-5762.
5 C7 Y" V6 L Q% n+ p8 U9 OMa, X., Zhao, B.J., Sun, D.G., Zhang, M., and Tan, S.N. (2009). Identification of aberrant promoter methylation of EDNRB gene in esophageal squamous cell carcinoma. Dis Esophagus 22, 55-61.+ `, R# N+ t$ m1 L% [' l
Makhov, P., Golovine, K., Kutikov, A., Canter, D., Rybko, V., Roshchin, D., Matveev, V., Uzzo, R.G., and Kolenko, V. (2011). Reversal of Epigenetic Silencing of AP-2alpha Results in Increased Zinc Uptake in DU-145 and LNCaP Prostate Cancer Cells. Carcinogenesis.
9 f; b! W @! f* C$ DMartin, D., Singer, M., Dhahbi, J., Mao, G., Zhang, L., Schroth, G., Pachter, L., and Boffelli, D. (2011a). Phyloepigenomic comparison of great apes reveals a correlation between somatic and germline methylation states. Genome Res.
9 o' M' s% ?9 w# C5 O7 SMartin, K., Ricciardelli, C., Hoffmann, P., and Oehler, M.K. (2011b). Exploring the immunoproteome for ovarian cancer biomarker discovery. Int J Mol Sci 12, 410-428.
M: z0 U% Z; C0 Q/ F1 u. [" f4 DMarzese, D.M., Gago, F.E., Orozco, J.I., Tello, O.M., Roque, M., and Vargas-Roig, L.M. (2011). Aberrant DNA methylation of cancer-related genes in giant breast fibroadenoma: a case report. J Med Case Reports 5, 516.$ Y8 D. a6 e) @& S: J' A2 Q: j2 w
Meker, S., Manna, C.M., Peri, D., and Tshuva, E.Y. (2011). Major impact of N-methylation on cytotoxicity and hydrolysis of salan Ti(IV) complexes: sterics and electronics are intertwined. Dalton Trans 40, 9802-9809.
7 U( N4 ^: H1 F ?" dMichels, K.B., Harris, H.R., and Barault, L. (2011). Birthweight, Maternal Weight Trajectories and Global DNA Methylation of LINE-1 Repetitive Elements. Plos One 6, e25254.- Q+ Q; o& v. ? j5 d) m
Momparler, R.L., Primeau, M., and Gagnon, J. (2003). Synergistic antineoplastic action of DNA methylation inhibitor 5-aza-2'-deoxycytidine and histone deacetylase inhibitor depsipeptide on human breast carcinoma cells. Int J Cancer 103, 177-184.2 `* m- h# C( c6 {
Moran, P., and Perez-Figueroa, A. (2011). Methylation changes associated with early maturation stages in the Atlantic salmon. Bmc Genet 12, 86.7 Y6 z/ t3 y. W! f" r
Motorin, Y., and Helm, M. (2011). RNA nucleotide methylation. Wiley Interdiscip Rev RNA 2, 611-631.
% j2 i9 l8 ^! q; C% kMurrell, A., Rakyan, V.K., and Beck, S. (2005). From genome to epigenome. Hum Mol Genet 14 Spec No 1, R3-R10.
/ C3 b7 q+ t6 b5 d- l1 q- Z A, dNakano, T., Tani, M., Nishioka, M., Kohno, T., Otsuka, A., Ohwada, S., and Yokota, J. (2005). Genetic and epigenetic alterations of the candidate tumor-suppressor gene MYO18B, on chromosome arm 22q, in colorectal cancer. Genes Chromosomes Cancer 43, 162-171.: ]0 i7 D& ^( t9 X& v) m: V
Nanty, L., Carbajosa, G., Heap, G.A., Ratnieks, F., van Heel, D.A., Down, T.A., and Rakyan, V.K. (2011). Comparative methylomics reveals gene-body H3K36me3 in Drosophila predicts DNA methylation and CpG landscapes in other invertebrates. Genome Res.& a% n' z$ j2 t0 V
Nephew, K.P., Balch, C., Yan, P., Craft, T., Young, S., Skalnik, D.G., and Huang, T.H.M. (2005). Antimitogenic and chernosensitizing effects of the methylation inhibitor zebularine in ovarian cancer. Mol Cancer Ther 4, 1505-1514.
3 m( c% k6 D6 D) |5 N5 UNeumann, L.C., Weinhausel, A., Thomas, S., Horsthemke, B., Lohmann, D.R., and Zeschnigk, M. (2011). EFS shows biallelic methylation in uveal melanoma with poor prognosis as well as tissue-specific methylation. Bmc Cancer 11, 380.
9 ]1 O% x* G! i, ^/ e+ hNiers, T.M., Richel, D.J., Meijers, J.C., and Schlingemann, R.O. (2011). Vascular endothelial growth factor in the circulation in cancer patients may not be a relevant biomarker. Plos One 6, e19873.* S. d* T% D5 I8 C" H" A) t
Niles, K.M., Chan, D., La Salle, S., Oakes, C.C., and Trasler, J.M. (2011). Critical period of nonpromoter DNA methylation acquisition during prenatal male germ cell development. Plos One 6, e24156.
. I! u5 W; S$ y2 U4 @Ning, B., Liu, G., Liu, Y., Su, X., Anderson, G.J., Zheng, X., Chang, Y., Guo, M., Zhao, Y., and Nie, G. (2011). 5-aza-2'-deoxycytidine activates iron uptake and heme biosynthesis by increasing c-Myc nuclear localization and binding to the E-boxes of TfR1 and ferrochelatase genes. J Biol Chem.! b5 S2 [' w1 q2 L" B0 o( F
Noguchi, M., Sun, W., Iijima, T., Kano, J., Kobayashi, H., Li, D., Morishita, Y., Okubo, C., and Anami, Y. (2008). Frequent aberrant methylation of the promoter region of sterile alpha motif domain 14 in pulmonary adenocarcinoma. Cancer Sci 99, 2177-2184.
* z( [; a3 t' l8 y Y. u0 B+ C0 y* ZOhgaki, H., Zawlik, I., Vaccarella, S., Kita, D., Mittelbronn, M., and Franceschi, S. (2009). Promoter Methylation and Polymorphisms of the MGMT Gene in Glioblastomas: A Population-Based Study. Neuroepidemiology 32, 21-29.; C6 V# T. \' \+ O* {
Otterson, G.A., Zhu, W.G., Srinivasan, K., Dai, Z.Y., Duan, W.R., Druhan, L.J., Ding, H.M., Yee, L., Villalona-Calero, M.A., and Plass, C. (2003). Methylation of adjacent CpG sites affects Sp1/Sp3 binding and activity in the p21(Cip1) promoter. Mol Cell Biol 23, 4056-4065.
4 A. M# z! X& q! M: ?" a/ [Patterson, K., Molloy, L., Qu, W., and Clark, S. (2011). DNA methylation: bisulphite modification and analysis. J Vis Exp.
! i6 ]( o# e" M, QPetersen, I., Chen, Y., Huhn, D., Knosel, T., Pacyna-Gengelbach, M., and Deutschmann, N. (2005). Downregulation of Connexin 26 in human lung cancer is related to promoter methylation. Int J Cancer 113, 14-21.( `) ]& A' n, m1 v0 {: X) ]& `3 }
Pettersson, F., Yau, C., Dobocan, M.C., Culjkovic-Kraljacic, B., Retrouvay, H., Puckett, R., Flores, L.M., Krop, I.E., Rousseau, C., Cocolakis, E., et al. (2011). Ribavirin treatment effects on breast cancers overexpressing eIF4E, a biomarker with prognostic specificity for luminal B-type breast cancer. Clin Cancer Res 17, 2874-2884.
. i, D* h) v- t* t" L; q/ {! DPetty, E., Laughlin, E., and Csankovszki, G. (2011). Regulation of DCC Localization by HTZ-1/H2A.Z and DPY-30 Does not Correlate with H3K4 Methylation Levels. Plos One 6, e25973.' F0 h \5 j, { w q |% c
Ptashne, M., Hobert, O., and Davidson, E. (2010). Questions over the scientific basis of epigenome project. Nature 464, 487.4 U! A$ ] t! t4 h0 J y
Quan, J., Yahata, T., Adachi, S., Yoshihara, K., and Tanaka, K. (2011). Identification of Receptor Tyrosine Kinase, Discoidin Domain Receptor 1 (DDR1), as a Potential Biomarker for Serous Ovarian Cancer. Int J Mol Sci 12, 971-982.
0 }: Z! i: ^) L% P- X' FRakyan, V.K., Beyan, H., Down, T.A., Hawa, M.I., Maslau, S., Aden, D., Daunay, A., Busato, F., Mein, C.A., Manfras, B., et al. (2011). Identification of type 1 diabetes-associated DNA methylation variable positions that precede disease diagnosis. Plos Genet 7, e1002300.
! y! i1 U9 J2 C, oRauscher, F.J., 3rd (2005). It is time for a Human Epigenome Project. Cancer Res 65, 11229." w+ K7 j# e. r7 u
Riggs, A.D., Rauch, T., Wang, Z.D., Zhang, X.M., Zhong, X.Y., Wu, X.W., Lau, S.K., Kernstine, K.H., and Pfeifer, G.P. (2007). Homeobox gene methylation in lung cancer studied by genome-wide analysis with a microarray-based methylated CpG island recovery assay. P Natl Acad Sci USA 104, 5527-5532., }: m( n3 X8 K
Royo, J.L., Hidalgo, M., Galan, J.J., Saez, C., Ferrero, E., Castilla, C., Ramirez-Lorca, R., Pelaez, P., Ruiz, A., and Japon, M.A. (2008). Methylation alterations are not a major cause of PTTG1 missregulation. Bmc Cancer 8.5 G6 N$ _; { |: ]! v# t
Saito, S., Kato, J., Hiraoka, S., Horii, J., Suzuki, H., Higashi, R., Kaji, E., Kondo, Y., and Yamamoto, K. (2011). DNA methylation of colon mucosa in ulcerative colitis patients: correlation with inflammatory status. Inflamm Bowel Dis 17, 1955-1965.* i0 d! F# r6 D0 r6 N3 p
Schreiner, F., El-Maarri, O., Gohlke, B., Stutte, S., Nuesgen, N., Mattheisen, M., Fimmers, R., Bartmann, P., Oldenburg, J., and Woelfle, J. (2011). Association of COMT genotypes with S-COMT promoter methylation in growth-discordant monozygotic twins and healthy adults. Bmc Med Genet 12, 115.
6 ^# o! c0 J+ {6 ~9 u! tSharp, A.J., Stathaki, E., Migliavacca, E., Brahmachary, M., Montgomery, S.B., Dupre, Y., and Antonarakis, S.E. (2011). DNA methylation profiles of human active and inactive X chromosomes. Genome Res.
: a+ g+ X% c2 j. `; eSingal, R., Das, P.M., Ramachandran, K., VanWert, J., Ferdinand, L., Gopisetty, G., and Reis, I.M. (2006). Methylation mediated silencing of TMS1/ASC gene in prostate cancer. Mol Cancer 5.
0 Y2 \) q; | I7 vSinger, H., Walier, M., Nusgen, N., Meesters, C., Schreiner, F., Woelfle, J., Fimmers, R., Wienker, T., Kalscheuer, V.M., Becker, T., et al. (2011). Methylation of L1Hs promoters is lower on the inactive X, has a tendency of being higher on autosomes in smaller genomes and shows inter-individual variability at some loci. Hum Mol Genet.
0 Y- N% k. Y! ~6 | w; T; kStahl, P.L., Bjursell, M.K., Mahdessian, H., Hober, S., Jirstrom, K., and Lundeberg, J. (2011). Translational database selection and multiplexed sequence capture for up front filtering of reliable breast cancer biomarker candidates. Plos One 6, e20794.+ ]( h( k$ J+ N0 v. k; r. e
Sun, C., Song, C., Ma, Z., Xu, K., Zhang, Y., Jin, H., Tong, S., Ding, W., Xia, G., and Ding, Q. (2011). Periostin identified as a potential biomarker of prostate cancer by iTRAQ-proteomics analysis of prostate biopsy. Proteome Sci 9, 22.
- i% N- g: @- oTang, H.H., and Goldberg, E. (2009). Homo sapiens Lactate Dehydrogenase c (Ldhc) Gene Expression in Cancer Cells Is Regulated by Transcription Factor Sp1, CREB, and CpG Island Methylation. J Androl 30, 157-167.4 [, i+ ~% Q. v% H
Tessema, M., and Belinsky, S.A. (2008). Mining the epigenome for methylated genes in lung cancer. Proc Am Thorac Soc 5, 806-810.
1 N( ~. s" u* S! OThomas, R.S., Boellmann, F., Zhang, L., Clewell, H.J., Schroth, G.P., Kenyon, E.M., and Andersen, M.E. (2010). Genome-wide Analysis of DNA Methylation and Gene Expression Changes in the Mouse Lung following Subchronic Arsenate Exposure. Toxicol Sci 117, 404-417.! A' i: e+ V! P: X' `
Ting, A.H., Serre, D., and Lee, B.H. (2010). MBD-isolated Genome Sequencing provides a high-throughput and comprehensive survey of DNA methylation in the human genome. Nucleic Acids Res 38, 391-399.
" A: l, A; S# |5 B2 W$ G* U3 aTong, D.L., Boocock, D.J., Coveney, C., Saif, J., Gomez, S.G., Querol, S., Rees, R., and Ball, G.R. (2011). A simpler method of preprocessing MALDI-TOF MS data for differential biomarker analysis: stem cell and melanoma cancer studies. Clin Proteomics 8, 14.
' F8 ^ D1 j, S! E# J/ KTong, J.H., Ng, D.C., Chau, S.L., So, K.K., Leung, P.P., Lee, T.L., Lung, R.W., Chan, M.W., Chan, A.W., Lo, K.W., et al. (2010). Putative tumour-suppressor gene DAB2 is frequently down regulated by promoter hypermethylation in nasopharyngeal carcinoma. Bmc Cancer 10, 253.! F) b' P0 e! a: L8 t
Toyama, A., Nakagawa, H., Matsuda, K., Ishikawa, N., Kohno, N., Daigo, Y., Sato, T.A., Nakamura, Y., and Ueda, K. (2011). Deglycosylation and label-free quantitative LC-MALDI MS applied to efficient serum biomarker discovery of lung cancer. Proteome Sci 9, 18.+ E3 ?9 B+ n* Y; E1 v
Toyooka, S., Yano, M., Tsukuda, K., Dote, H., Ouchida, M., Hanabata, T., Aoe, M., Date, H., Gazdar, A.F., and Shimizu, N. (2005). Aberrant promoter methylation of human DAB2 interactive protein (hDAB2IP) gene in lung cancers. Int J Cancer 113, 59-66.& b; V2 e d' I2 u1 f- w0 w! x* _
Tsai, C.N., Tsai, C.L., Tse, K.P., Chang, H.Y., and Chang, Y.S. (2002). The Epstein-Barr virus oncogene product, latent membrane protein 1, induces the downregulation of E-cadherin gene expression via activation of DNA methyltransferases. Proc Natl Acad Sci U S A 99, 10084-10089.
9 A2 l& ]2 f7 A5 h8 Z. e4 GTurashvili, G., McKinney, S.E., Goktepe, O., Leung, S.C., Huntsman, D.G., Gelmon, K.A., Los, G., Rejto, P.A., and Aparicio, S.A. (2011). P-cadherin expression as a prognostic biomarker in a 3992 case tissue microarray series of breast cancer. Mod Pathol 24, 64-81.
6 {5 J0 L2 |8 ~1 {7 P. hvan den Bent, M.J., Gravendeel, L.A., Gorlia, T., Kros, J.M., Lapre, L., Wesseling, P., Teepen, J., Idbaih, A., Sanson, M., Sillevis Smitt, P.A., et al. (2011). A hypermethylated phenotype in anaplastic oligodendroglial brain tumors is a better predictor of survival than MGMT methylation in anaplastic oligodendroglioma: a report from EORTC study 26951. Clin Cancer Res.
5 f" Y8 v5 V! j2 L, N6 N9 Dvan der Gun, B.T., de Groote, M.L., Kazemier, H.G., Arendzen, A.J., Terpstra, P., Ruiters, M.H., McLaughlin, P.M., and Rots, M.G. (2011). Transcription factors and molecular epigenetic marks underlying EpCAM overexpression in ovarian cancer. Br J Cancer 105, 312-319.
8 l$ w# G( F; kWang, L., Li, L., Zhang, H., Luo, X., Dai, J., Zhou, S., Gu, J., Zhu, J., Atadja, P., Lu, C., et al. (2011a). Structure of human SMYD2 reveals the basis of p53 tumor suppressor methylation. J Biol Chem.$ n* ^+ W& }; S0 _" B
Wang, X., Kang, G.H., Campan, M., Weisenberger, D.J., Long, T.I., Cozen, W., Bernstein, L., Wu, A.H., Siegmund, K.D., Shibata, D., et al. (2011b). Epigenetic Subgroups of Esophageal and Gastric Adenocarcinoma with Differential GATA5 DNA Methylation Associated with Clinical and Lifestyle Factors. Plos One 6, e25985.
+ o! J' S/ e" d: ?" G4 w; gWang, Y.C., and Chen, B.S. (2011). A network-based biomarker approach for molecular investigation and diagnosis of lung cancer. Bmc Med Genomics 4, 2.
8 W) }+ @8 S; C; {8 d. s: h$ [3 S1 IWilhelm-Benartzi, C.S., Houseman, E.A., Maccani, M.A., Poage, G.M., Koestler, D.C., Langevin, S.M., Gagne, L.A., Banister, C., Padbury, J.F., and Marsit, C.J. (2011). In Utero Exposures, Infant Growth, and DNA Methylation of Repetitive Element and Developmentally Related Genes in Human Placenta. Environ Health Perspect. `/ Z) j% f8 \
Wong, K.Y., Liang, R., So, C.C., Jin, D.Y., Costello, J.F., and Chim, C.S. (2011). Epigenetic silencing of MIR203 in multiple myeloma. Br J Haematol 154, 569-578.
- ]7 O1 q' d: R, YWu, G., Wang, T., Liu, H.L., Chen, Y.S., Liu, W., and Yu, J. (2009). Methylation associated inactivation of RASSF1A and its synergistic effect with activated K-Ras in nasopharyngeal carcinoma. J Exp Clin Canc Res 28.0 \# A0 c$ V8 c7 P4 u- f% j5 j( O
Wu, J., Smith, L.T., Plass, C., and Huang, T.H. (2006). ChIP-chip comes of age for genome-wide functional analysis. Cancer Res 66, 6899-6902.* a' R. R) o8 c$ \- ]
Wu, J., Xie, N., Feng, Y., and Zheng, Y.G. (2011). Scintillation Proximity Assay of Arginine Methylation. J Biomol Screen.
* |6 q/ X8 Z8 c# I+ c. y" xZampieri, M., Guastafierro, T., Calabrese, R., Ciccarone, F., Bacalini, M.G., Reale, A., Perilli, M., Passananti, C., and Caiafa, P. (2011). ADP-ribose polymers localized on Ctcf-Parp1-Dnmt1 complex prevent methylation of Ctcf target sites. Biochem J.
9 U; x4 p9 r5 q1 WZhang, Y., and Chen, H. (2011). Genistein attenuates WNT signaling by up-regulating sFRP2 in a human colon cancer cell line. Exp Biol Med (Maywood) 236, 714-722. a. l3 y7 A; V- Y6 R2 L' X
Zhang, Z., Tang, H., Wang, Z., Zhang, B., Liu, W., Lu, H., Xiao, L., Liu, X., Wang, R., Li, X., et al. (2011). MiR-185 Targets the DNA Methyltransferases 1 and Regulates Global DNA Methylation in human glioma. Mol Cancer 10, 124.
6 K3 R$ B, `" ^5 T' \7 |4 `/ oZhao, M., Li, D., Da, L., Tang, H., and Li, T. (2008). CpG methylation plays a vital role in determining tissue- and cell-specific expression of the human cell-death-inducing DFF45-like effector A gene through the regulation of Sp1/Sp3 binding. Nucleic Acids Res 36, 330-341.& J4 L1 ~' d, H1 `+ e
Zhou, B.O., and Zhou, J.Q. (2011). Recent transcription-induced histone H3K4 methylation inhibits gene reactivation. J Biol Chem.
+ g0 e# S' M/ q$ I9 JZhou, W.H., Tang, F., Xu, J., Wu, X., Feng, Z.Y., Li, H.G., Lin, D.J., Shao, C.K., and Liu, Q. (2011). Aberrant upregulation of 14-3-3o expression serves as an inferior prognostic biomarker for gastric cancer. Bmc Cancer 11, 397.
5 _/ |8 }5 H% O% Z- L* ^Zou, J., Hong, G., Guo, X., Zhang, L., Yao, C., Wang, J., and Guo, Z. (2011). Reproducible Cancer Biomarker Discovery in SELDI-TOF MS Using Different Pre-Processing Algorithms. Plos One 6, e26294.
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发表于 2012-1-20 14:35
发表于 2012-1-20 15:45
