PDF电子书：PROTEIN-PROTEIN （2012）

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PROTEIN-PROTEIN INTERACTIONS – COMPUTATIONAL AND EXPERIMENTAL TOOLS
6 r  U! F( h$ H  s2 n7 J/ U' i$ [Edited by Weibo Cai and Hao Hong
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: n, ~& j$ v, A8 n; MCopyright © 2012 InTech  y: [$ c& B4 M/ G( ^' E  o% _+ t/ D8 l9 w
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Contents( a  t  p/ x  G/ a: c1 y& k
Preface   IX$ ?9 {& W8 U6 h0 s/ t8 r" n
Part 1    Computational Approaches   1
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Chapter 1  Computational Methods for Prediction of Protein-Protein Interaction Sites 3 Aleksey 0 l- k$ E3 G6 `1 O" B
Porollo and Jaroslaw Meller
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Chapter 2   Advances in Human-Protein Interaction -
9 M4 g7 m9 q$ a* G. KInteractive and Immersive Molecular Simulations   27
0 h% H% e+ H4 U4 F: R' [Nicolas Férey, Alex Tek, Benoist Laurent, Marc Piuzzi,* E0 a3 H) t0 {( {5 O0 }
Zhihan Lu, Marc Baaden, Olivier Delalande, Matthieu Chavent, Christine Martin, Lorenzo Piccinali,   y5 x6 [" v9 P! w
Brian Katz,9 C+ M8 R. c/ |" t
Patrick Bourdot and Ludovic Autin
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Chapter 3    Protein Interactome and Its
$ L- |( O8 `9 M# ~Application to Protein Function Prediction  65
! A: v2 R, K8 Z" Y# R, \" b0 KWoojin Jung, Hyun-Hwan Jeong, and KiYoung Lee
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Chapter 4    Integrative Approach for Detection of Functional Modules from
+ e, G- g) S" O4 ^! p5 x1 m, EProtein-Protein Interaction Networks   97, ?$ }2 m$ ?% G% F( R: V: C2 W
Zelmina Lubovac-Pilav
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4 f; w( B/ B* ]' F( zChapter 5    Mining Protein5 w9 d. p8 `: \
Interaction Groups    1136 C* x+ A5 G' H, I# F2 w' D! z4 S
Lusheng Wang
! F; [2 g  J. {9 }& u' OChapter 6   Prediction of Combinatorial Protein-Protein Interaction from Expression Data Based$ e0 W1 Q9 m9 ^7 s) h% ^% f4 W
on Conditional Probability   131) m1 B; f2 ~3 e+ h1 W$ x
Takatoshi Fujiki, Etsuko Inoue,
8 Q! R  Q7 K/ Z6 QTakuya Yoshihiro and Masaru Nakagawa# T) D' L; U  C
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Chapter 7   Inferring Protein-Protein Interactions (PPIs) Based on Computational Methods   147
9 F7 k% A2 D# k7 |. ?4 `3 O* eShuichi Hirose
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VI     Contents
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: ~" p3 T3 f0 U9 u8 YChapter 8   Slow Protein Conformational Change, Allostery and Network Dynamics   169 Fan Bai,
7 ], @1 s; R, P0 B1 jZhanghan Wu, Jianshi Jin,; R. ~' B8 n% J- ^
Phillip Hochendoner and Jianhua Xing8 Z. }  J# y9 x- Z+ E( V

9 S! a) ^; U' i' kChapter 9     Prediction of Protein Interaction Sites Using Mimotope Analysis    189 Jian Huang, 3 q; M% V( _/ m  m7 ~1 m+ {# z
Beibei Ru and Ping Dai0 y1 q. `& H9 h, s
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Chapter 10   Structural Bioinformatics of Proteins: Predicting the Tertiary and Quaternary * {# M( x8 J4 M' r
Structure of Proteins from Sequence  207
' T0 ~  ?0 Y" AJ. Planas-Iglesias, J. Bonet, M.A. Marín-López,
7 b) m4 c8 j9 h9 O% O, h2 ]( sE. Feliu, A. Gursoy and B. Oliva, u! G; P: v, A9 e- F4 O
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Chapter 11   Computational Approaches to0 {2 N1 d3 N) P+ I- g/ _# R# c  v; s
Predict Protein Interaction   2317 a$ s8 O0 r: ?  g$ s' D# E
Darby Tien-Hao Chang! W$ \  C6 k2 i& J( y/ u

5 q1 a( c7 n+ F  v1 n* H$ I5 w& E- _Chapter 12     G-Protein Coupled Receptors:2 q* J( O5 p9 Y9 F
Experimental and Computational Approaches  247, P7 A* k. }; _$ |9 M5 ~- w5 ~) f
Amirhossein Sakhteman, Hamid Nadri and Alireza Moradi; [1 m4 q$ @. |( m; k2 _
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Chapter 13   Computational Approaches to Elucidating Transient Protein-Protein Interactions, % E6 `2 e, F  C# e& }' E) @- A
Predicting Receptor-Ligand Pairings 259
* P9 M2 ^7 z, I  Z1 w3 Z' ~Ernesto Iacucci, Samuel Xavier de Souza and Yves Moreau
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; j( d7 M0 G% i$ g% oChapter 14   Finding Protein Complexes via
9 k1 U+ c5 _4 z) i% `- o0 D% n) DFuzzy Learning Vector Quantization Algorithm   273
. _: l3 `/ x/ ]Hamid Ravaee, Ali Masoudi-Nejad and Ali Moeini
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, S, ?- ]0 V/ A# sPart 2    Experimental Approaches   285& W0 ^" {0 Z- ?5 u

& r; L+ P0 o& f  |3 E: i5 }% ~Chapter 15    In Vivo Imaging of Protein-Protein Interactions   287
- w: I# `9 H8 A5 D7 ^* e8 V/ X, GHao Hong, Shreya Goel and Weibo Cai! f: @0 I: T9 q  F2 T

) H; n* t$ Z* b" w) _3 qChapter 16   NMR Investigations on Ruggedness of Native State Energy Landscape in Folded Proteins  
8 }- \5 R& m* ]7 P- E& ~  a; Z4 T) o305 Poluri Maruthi Krishna Mohan
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& p  y( \4 m0 _1 zChapter 17    Conformational and Disorder
0 S( f9 H- W0 J1 U6 ^4 cto Order Transitions in Proteins:# Y/ S6 u& w" v; R
Structure / Function Correlation in Apolipoproteins 331
( k* U: o. Q- b( ~4 r6 IJosé Campos-Terán, Paola Mendoza-Espinosa, Rolando Castillo and Jaime Mas-Oliva
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Chapter 18   Protein-Protein Interactions in Salt Solutions   359
) W9 Q3 m# U; \1 p- O9 x3 BJifeng Zhang, e' k0 u& s: a+ S6 C

# |. K. ^# P; y* JContents      VII3 g( w! y$ ]4 V8 `) B

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  n' A$ a. z5 }4 GPart 3    Others% N$ A& Q) J, @$ d+ @
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Chapter 19   Computational Tools
5 p# t7 }+ I1 T, U+ c6 e& cand Databases for the Study
4 R; S; U' s' iand Characterization of Protein Interactions   379( T& J" H% d6 H/ e: ^
Jose Ramon Blas, Joan Segura and Narcis Fernandez-Fuentes
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Chapter 20   Protein-Protein Interaction Networks: Structures, Evolution, and Application to Drug
# G' {" ?" O0 _9 D$ [( T2 G/ iDesign   405 Takeshi Hase and Yoshihito Niimura
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Chapter 21   A Survey on Evolutionary Analysis in PPI Networks   4275 K" e1 D0 T0 x& ]/ L: w: }( c2 I
Pavol Jancura and Elena Marchiori. R+ q% ^! l* N7 q
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Chapter 22     Scalable, Integrative Analysis, K& w1 A7 B; `
and Visualization of Protein Interactions   4573 k7 j: l1 e9 A% z
David Otasek, Chiara Pastrello and Igor Jurisica
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