PDF电子书：PROTEIN-PROTEIN （2012）

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PROTEIN-PROTEIN INTERACTIONS – COMPUTATIONAL AND EXPERIMENTAL TOOLS; e- I6 e' J5 Q' k& R4 a
Edited by Weibo Cai and Hao Hong
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  ]6 b  x0 G* w. l# UCopyright © 2012 InTech
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Contents
( o: H7 k6 S3 ^5 jPreface   IX
9 S/ l2 h# x9 P# [- A0 ?- i, p5 t$ b9 iPart 1    Computational Approaches   1* w% ?# e4 t& \* {$ S0 P
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Chapter 1  Computational Methods for Prediction of Protein-Protein Interaction Sites 3 Aleksey 2 Y4 I$ y+ ~% s9 n6 Y
Porollo and Jaroslaw Meller, J8 ~$ B% h6 w9 u! x

& F* ~* J: j0 u/ W& wChapter 2   Advances in Human-Protein Interaction -
$ n7 D6 `! r' tInteractive and Immersive Molecular Simulations   27
2 f8 M7 {0 ]0 U5 Z; y! z! @Nicolas Férey, Alex Tek, Benoist Laurent, Marc Piuzzi," f5 V. E* k! }, D: z: L
Zhihan Lu, Marc Baaden, Olivier Delalande, Matthieu Chavent, Christine Martin, Lorenzo Piccinali, - ]! [# N9 x# W) L* x
Brian Katz,* k) P% i. |* I0 f
Patrick Bourdot and Ludovic Autin4 @* o& Y' r% z! {& k& d
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Chapter 3    Protein Interactome and Its2 h* X2 u( y" ~9 L& h$ B
Application to Protein Function Prediction  65* T6 W% i+ A# Z* A. J
Woojin Jung, Hyun-Hwan Jeong, and KiYoung Lee
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2 E0 S/ D  b, y8 F* v0 q4 [; m8 eChapter 4    Integrative Approach for Detection of Functional Modules from% Q$ B/ I' T" p! l
Protein-Protein Interaction Networks   97
% N% n5 j8 j. K: T( S9 [; _Zelmina Lubovac-Pilav. |& w9 h. b$ }6 y
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Chapter 5    Mining Protein& `' q8 G: z' ~) U5 |
Interaction Groups    113
8 t3 ]' E2 h2 w) r% kLusheng Wang6 t, E7 }, k0 D, I" L$ Q: T
Chapter 6   Prediction of Combinatorial Protein-Protein Interaction from Expression Data Based& T1 f# q, m" y5 ]
on Conditional Probability   131$ u4 a; k. S- |1 j9 R: w/ y' {! N
Takatoshi Fujiki, Etsuko Inoue,
, i) W' p# y& M4 Z! k. ETakuya Yoshihiro and Masaru Nakagawa4 e1 I6 b+ D, B8 {% a& P% t, \& k
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Chapter 7   Inferring Protein-Protein Interactions (PPIs) Based on Computational Methods   147
) R9 ~: p) K2 f* K. d7 ?# u( S4 `Shuichi Hirose' W# Y- G" l; m9 ~4 ~2 T6 n3 o: g

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VI     Contents
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Chapter 8   Slow Protein Conformational Change, Allostery and Network Dynamics   169 Fan Bai, * \6 W/ S; y( e
Zhanghan Wu, Jianshi Jin,# I0 ^+ ]$ F, }( M0 ?
Phillip Hochendoner and Jianhua Xing
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Chapter 9     Prediction of Protein Interaction Sites Using Mimotope Analysis    189 Jian Huang,
+ k+ ]( M9 ~" ?. \  @Beibei Ru and Ping Dai0 Y" l4 }% s% }* H0 f  ^

: `6 t4 O' T' ^0 NChapter 10   Structural Bioinformatics of Proteins: Predicting the Tertiary and Quaternary
  h. m9 D6 a% K( v- ^$ V8 _Structure of Proteins from Sequence  207) u$ M4 [# w# N8 {- Z
J. Planas-Iglesias, J. Bonet, M.A. Marín-López,
2 W3 `/ X. ?$ B; o+ v) tE. Feliu, A. Gursoy and B. Oliva
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' Z3 p' x5 F; U. r9 PChapter 11   Computational Approaches to
) w' k" d( I: x" ]+ U+ `& oPredict Protein Interaction   2311 U# W* O/ A6 K& x3 ], t" Y
Darby Tien-Hao Chang
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Chapter 12     G-Protein Coupled Receptors:
' @& l% e# y. ?9 FExperimental and Computational Approaches  2477 G  W# `, M) Y+ q* u1 D
Amirhossein Sakhteman, Hamid Nadri and Alireza Moradi; y0 Z' ?1 l% S$ @6 W% d7 g
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Chapter 13   Computational Approaches to Elucidating Transient Protein-Protein Interactions, " v! l: a, ~; g, L* u8 b
Predicting Receptor-Ligand Pairings 259, h) c4 J: H+ S7 b. v# J
Ernesto Iacucci, Samuel Xavier de Souza and Yves Moreau
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Chapter 14   Finding Protein Complexes via3 F+ m6 Y4 f, O6 d% l. H
Fuzzy Learning Vector Quantization Algorithm   273- ?7 J' C" R# g6 ?& \' R8 Z
Hamid Ravaee, Ali Masoudi-Nejad and Ali Moeini" Z  P, D' A2 [4 _( @+ z" S

! P9 B( |$ S( E; Z0 ePart 2    Experimental Approaches   285
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Chapter 15    In Vivo Imaging of Protein-Protein Interactions   287" u9 O2 s# Z0 P7 ~0 n
Hao Hong, Shreya Goel and Weibo Cai9 O( G+ Y+ @" }9 p/ V2 k
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Chapter 16   NMR Investigations on Ruggedness of Native State Energy Landscape in Folded Proteins  
$ B2 q+ J6 I* [305 Poluri Maruthi Krishna Mohan% E4 C$ q, s. `  q$ _
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Chapter 17    Conformational and Disorder, Q! J0 `' k. W4 h! T& H: t: u0 v6 t
to Order Transitions in Proteins:
8 w/ u0 Q. K: @" S" dStructure / Function Correlation in Apolipoproteins 3310 z+ H: h: e, z1 G' n8 r
José Campos-Terán, Paola Mendoza-Espinosa, Rolando Castillo and Jaime Mas-Oliva
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Chapter 18   Protein-Protein Interactions in Salt Solutions   359
5 C3 X, s! L6 k6 j/ q2 M8 i. UJifeng Zhang, d0 p' S$ g$ Q+ }; ]8 X

1 a$ g% H/ R9 k! ?6 b& U7 d5 o, ~Contents      VII7 ~% ?. U: ^+ D2 ^% c$ P+ c9 q5 S6 _. J
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Part 3    Others& w  s$ ^- d$ V4 r6 N  M) I2 z
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Chapter 19   Computational Tools
+ Y" X) Q2 Y6 A. G9 Mand Databases for the Study0 D) V5 D  W* A- g
and Characterization of Protein Interactions   379' u4 o% E! k& E+ a$ ^/ x3 q
Jose Ramon Blas, Joan Segura and Narcis Fernandez-Fuentes9 E7 T1 f) U( ]# y$ |" n- a+ V
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Chapter 20   Protein-Protein Interaction Networks: Structures, Evolution, and Application to Drug : i+ h8 j: R" r. f$ c8 h; O  }& g) {
Design   405 Takeshi Hase and Yoshihito Niimura
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" b! A6 F: g3 \- E6 J0 [& lChapter 21   A Survey on Evolutionary Analysis in PPI Networks   427
  e; B1 v% P) {( e# dPavol Jancura and Elena Marchiori
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) k' {) `' ^) _' e+ S: T4 |Chapter 22     Scalable, Integrative Analysis
# l  S/ P4 h+ }7 o1 vand Visualization of Protein Interactions   4570 x5 N: y9 [( d* \+ M$ F0 P
David Otasek, Chiara Pastrello and Igor Jurisica! b9 o2 |! C4 ~6 D0 F( Z% N& f; J

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