PDF电子书：Fungal Genomics. Methods and Protocols MMB vol.722 --2011

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Fungal Genomics# h7 _! Y, O6 k/ ?: N2 B
Methods and Protocols- _' B8 ?) ~/ @8 n
Series: Methods in Molecular Biology, Vol. 722
8 h4 h/ W0 l/ _Xu, Jin-Rong; Bluhm, Burton H. (Eds.), m8 D' H. L" z/ g* B5 Z6 P
2011, XI, 285p. 29 illus..2 n9 _3 Q; A! {# P
A product of Humana Press) ~, S9 P" i4 H* r; i4 E( I5 n

7 S, {+ ]* o3 j3 [1 Genome Sequencing and Assembly . . . . . . . . . . . . . . . . . .         1! m$ g' z, A, d* ^; |% V* c% ^
Manfred G. Grabherr, Evan Mauceli, and Li-Jun Ma
* p" [, b* _9 d6 `" v) y2 Targeted Cloning of Fungal Telomeres . . . . . . . . . . .         116 A" e9 b/ }: L# X& O" H( \$ m
Mark L. Farman4 l- q# `5 I8 `5 f
3 Identification and Annotation of Repetitive Sequences in Fungal Genomes .         33
* V9 l1 t5 F& |/ I1 Y/ K( \Braham Dhillon and Stephen B. Goodwin
5 t: M7 f$ b" `. }9 r. _, Q4 Next-Generation Sequencing and Potential Applications in Fungal Genomics . .         514 R9 D3 z' [% {8 Z3 C  Z1 T
Phillip SanMiguel
9 W8 d7 B% ]/ P- D1 Q$ Y+ i5 Getting the Most Out of Your Fungal Microarray Data:
! h8 T0 A4 L8 r( \* `4 X+ wTwo Cost- and Time-Effective Methods . . . . . . . . . . . . . .         61; d* @: J+ g$ Y6 i" a" z
Sandra M. Mathioni, André Beló, Jeffrey P. Townsend,
  M3 H! A/ K' L1 M, v/ ~and Nicole M. Donofrio
1 n5 v" [  J" X/ A* ?6 Fusarium graminearum from Expression Analysis to Functional Assays . . . . .         79
  z( ]/ D/ ]8 F; G4 \/ j3 I7 cHeather E. Hallen-Adams, Brad L. Cavinder, and Frances Trail6 v* @: T$ v3 ?5 H
7 EST Analysis Pipeline: Use of Distributed Computing Resources . . . . . . . . .         103  F/ p" @5 c3 O# E$ J
Francisco Javier González and Juan Antonio Vizcaíno
) `9 C, h, |* F  [0 Q1 \; L* T. i, g8 The Application of ChIP-chip Analysis in the Rice Blast Pathogen . . . . . .         121
+ j# s+ i& ]9 h4 _Soonok Kim and Thomas K. Mitchell
2 C2 w& b+ z# y* g9 Proteome Studies of Filamentous Fungi . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .         133
. V; O0 S6 s1 b& x6 ?$ SScott E. Baker and Ellen A. Panisko0 N% ]( f5 u( f( I8 K/ f, V. |5 H: f
10 A Bioinformatics Pipeline for Sequence-Based Analyses
3 c0 J6 B& q$ Q! F4 kof Fungal Biodiversity . . . . . . . . . . . . . . .         1410 J1 h+ r1 C9 Z7 n
D. Lee Taylor and Shawn Houston
1 m7 v! Z' A( p$ r! B7 B11 Identifying Protein Complexes by Affinity Purification- A$ B& D1 Y) q- a2 A: ~- k
and Mass Spectrometry Analysis in the Rice Blast Fungus . . . . . . . . . . . . . . . . . .         1573 a/ Y' u* Z5 R" b- Z/ c3 x( d
Wende Liu, Anton Iliuk, Andy Tao, and Shengli Ding. w- x. @! _  |/ o4 M& s/ {
12 Large Scale Identification of Genes Involved in Plant–Fungal8 @/ H# Y4 W2 W/ D. m
Interactions Using Illumina’s Sequencing-by-Synthesis Technology . . . . . . . . . .         1673 [8 X( T. ?2 {7 E" D# x2 R
R.C. Venu, Yuan Zhang, Brian Weaver, Peter Carswell,
. |# x9 w, b; \9 }+ }: m% mThomas K. Mitchell, Blake C. Meyers, Michael J. Boehm,
" j; J9 K& @+ P$ Vand Guo-Liang Wang$ }( N8 J3 J+ c: a2 B$ X4 y8 v
13 High-Throughput Production of Gene Replacement Mutants
( d! o. X1 n$ m6 g  R' t3 h6 _) H: ain Neurospora crassa . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .         179
/ e! H: z0 v! @2 K3 ]) S! BGyungsoon Park, Hildur V. Colot, Patrick D. Collopy,
3 q* [+ g. F$ \: OSvetlana Krystofova, Christopher Crew, Carol Ringelberg,
: @% l3 ~2 L9 q2 F2 TLiubov Litvinkova, Lorena Altamirano, Liande Li, Susan Curilla,
. O' L0 _4 M7 |Wei Wang, Norma Gorrochotegui-Escalante, Jay C. Dunlap,
/ `2 \; J# D! _1 Wand Katherine A. Borkovich
6 b" {! s1 B7 S$ R* V14 Phenotypic Analysis of Neurospora crassa Gene Deletion Strains . . . . . . . . . . . . . .         191" i( l# Y" s# I! X5 C
Gloria E. Turner! I0 E* b; e9 n' N% W( ?) B0 N
15 Efficient Approaches for Generating GFP Fusion and Epitope-Tagging
" V1 g3 n& H( |1 i- Q$ UConstructs in Filamentous Fungi . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .         199
$ z. n% }& u2 _: ^; aXiaoying Zhou, Guotian Li, and Jin-Rong Xu
! }: `/ w" l0 y: Y# A  S1 A16 Large-Scale Insertional Mutagenesis in Magnaporthe oryzae" N4 D& {- |) @
by Agrobacterium tumefaciens-Mediated Transformation . . . . . . . . . . . . . . . . . . .         213
$ j0 R; F$ I2 pXiao-Lin Chen, Jun Yang, and You-Liang Peng
5 u3 o6 D/ f* A7 m3 ^& E3 c17 Molecular Methods for Studying the Cryphonectria parasitica – Hypovirus
$ I8 K  Z/ O( C9 d6 i( z% OExperimental System . . . . . . . . . . . . . . .         225: }2 g( i( o1 |  j) a
Angus L. Dawe, Rong Mu, Gloricelys Rivera, and Joanna A. Salamon
: i6 W) P$ B. A18 Metabolic Fingerprinting in Fusarium verticillioides
& D. `8 {1 [) I2 l& Cto Determine Gene Function . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .         2379 o. j9 \/ o' |  P  D) t% M
Jonathon E. Smith and Burton H. Bluhm) a" ]( m: i( j& r$ v
19 Tapping Genomics to Unravel Ectomycorrhizal Symbiosis . . . . . . . . . . . . . . . . . .         249
; M/ \% j! R2 @" _% ~2 f) x6 zJonathan M. Plett, Barbara Montanini, Annegret Kohler,
5 m; R3 u/ n4 \6 x9 iSimone Ottonello, and Francis Martin6 W4 y' ?9 i9 y; C5 r) L
Index . 2832 q9 j, n, q  W5 m+ w/ q# j

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