PDF电子书：Fungal Genomics. Methods and Protocols MMB vol.722 --2011

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Fungal Genomics
( e( g  \* |/ L+ }  ]& n% vMethods and Protocols  H$ R5 k1 t$ h: S( b) s' C3 Q! S
Series: Methods in Molecular Biology, Vol. 722
( @4 O: Z; H) w6 S6 L0 EXu, Jin-Rong; Bluhm, Burton H. (Eds.)  U7 e# E$ H& x' X
2011, XI, 285p. 29 illus..9 s* w& |2 O( ?- L1 U$ {* R
A product of Humana Press
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1 Genome Sequencing and Assembly . . . . . . . . . . . . . . . . . .         1# z7 f# x0 k& U$ d( @" U( k+ E' U7 `
Manfred G. Grabherr, Evan Mauceli, and Li-Jun Ma
/ K" j! Q6 ~1 f9 E2 Targeted Cloning of Fungal Telomeres . . . . . . . . . . .         11/ u/ w) I  v( |% @% W, F8 o9 v6 F4 \
Mark L. Farman
$ P; Z0 H, h+ Q! \2 I$ K3 Identification and Annotation of Repetitive Sequences in Fungal Genomes .         33
9 Q+ e9 h; T/ \$ O1 ~2 ^- D* ZBraham Dhillon and Stephen B. Goodwin
% a2 o) Z2 e( ]% H: q* l. q4 Next-Generation Sequencing and Potential Applications in Fungal Genomics . .         51
- y! v% F; e: J- r9 p/ bPhillip SanMiguel
7 }( p# O* z4 b, j$ y5 Getting the Most Out of Your Fungal Microarray Data:* E* S2 q! n) L
Two Cost- and Time-Effective Methods . . . . . . . . . . . . . .         61* W* }$ w. Y9 w
Sandra M. Mathioni, André Beló, Jeffrey P. Townsend,
9 u  O2 R, X# V2 E( M6 ^1 S+ @and Nicole M. Donofrio1 U0 O! h" ?/ z* [
6 Fusarium graminearum from Expression Analysis to Functional Assays . . . . .         79
1 R& q+ I/ e* QHeather E. Hallen-Adams, Brad L. Cavinder, and Frances Trail
& g! d. z  C; [3 ?8 Q0 |3 U7 EST Analysis Pipeline: Use of Distributed Computing Resources . . . . . . . . .         103
! ^- |9 N. ^2 l$ r1 W  tFrancisco Javier González and Juan Antonio Vizcaíno$ k7 a- I3 L/ ]* U# ?0 P! Y
8 The Application of ChIP-chip Analysis in the Rice Blast Pathogen . . . . . .         121
6 O  Z+ t+ Y. z: }) l7 jSoonok Kim and Thomas K. Mitchell
# G# N$ w) Y" D+ W/ j, W7 _9 Proteome Studies of Filamentous Fungi . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .         133
- V2 H  s( x  h+ M$ W5 WScott E. Baker and Ellen A. Panisko
3 ?  O8 G; e: i8 {2 j4 o* J10 A Bioinformatics Pipeline for Sequence-Based Analyses
. A# W$ y9 f9 J4 R  rof Fungal Biodiversity . . . . . . . . . . . . . . .         1412 |0 x% x8 u8 h
D. Lee Taylor and Shawn Houston
7 m& x; p; [6 R! b11 Identifying Protein Complexes by Affinity Purification
+ @9 F. a7 k; \& B3 Jand Mass Spectrometry Analysis in the Rice Blast Fungus . . . . . . . . . . . . . . . . . .         157
5 ~0 e/ F( A7 @* b3 X/ j* O" e4 tWende Liu, Anton Iliuk, Andy Tao, and Shengli Ding2 Z+ A! }; E% Q
12 Large Scale Identification of Genes Involved in Plant–Fungal! ]  H; R( K; K0 p0 M
Interactions Using Illumina’s Sequencing-by-Synthesis Technology . . . . . . . . . .         167
; V, p1 P' F4 Y2 p, hR.C. Venu, Yuan Zhang, Brian Weaver, Peter Carswell,. }, I2 T& s/ X: b1 Z5 y
Thomas K. Mitchell, Blake C. Meyers, Michael J. Boehm,3 r# t5 A. ?, \4 q2 G8 [2 u; u
and Guo-Liang Wang
: Q/ k$ O7 v  D# N! D+ _13 High-Throughput Production of Gene Replacement Mutants6 Y* ?' e# h( y) G# F0 b
in Neurospora crassa . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .         179
; {) a- A; f5 Z8 z4 eGyungsoon Park, Hildur V. Colot, Patrick D. Collopy,
* n% m8 r0 a6 MSvetlana Krystofova, Christopher Crew, Carol Ringelberg,( i3 m/ O/ V: _- u: o9 z/ Y) D7 J. w1 `
Liubov Litvinkova, Lorena Altamirano, Liande Li, Susan Curilla,
3 R8 H% n* w. W' Y+ @7 Y9 |! t; qWei Wang, Norma Gorrochotegui-Escalante, Jay C. Dunlap,
% s1 T% X0 E) Uand Katherine A. Borkovich
2 a3 Z/ E7 {) T9 _( W* P14 Phenotypic Analysis of Neurospora crassa Gene Deletion Strains . . . . . . . . . . . . . .         191& d! s2 ~7 {" F6 u
Gloria E. Turner) H& J0 |* \9 @: }" v* j4 z
15 Efficient Approaches for Generating GFP Fusion and Epitope-Tagging. {& S& q; _* F! V& J* A
Constructs in Filamentous Fungi . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .         199/ ]6 N0 S) |9 |8 m7 F% m
Xiaoying Zhou, Guotian Li, and Jin-Rong Xu0 P: o+ C2 ?# m0 J' Y9 Q# Q
16 Large-Scale Insertional Mutagenesis in Magnaporthe oryzae4 d0 w6 h/ b3 t, |4 Y; |% A4 E
by Agrobacterium tumefaciens-Mediated Transformation . . . . . . . . . . . . . . . . . . .         213
* S9 \" E0 ?# L; P$ a; W3 c2 EXiao-Lin Chen, Jun Yang, and You-Liang Peng
) ]( e/ D; u  U# ?17 Molecular Methods for Studying the Cryphonectria parasitica – Hypovirus! T" D* W6 n4 n. o
Experimental System . . . . . . . . . . . . . . .         225
5 K5 w2 z# a( o3 l. ~; z5 J( G! iAngus L. Dawe, Rong Mu, Gloricelys Rivera, and Joanna A. Salamon
9 a1 K- l. k, e5 ?18 Metabolic Fingerprinting in Fusarium verticillioides* ~) _( R* }4 Q0 m$ O
to Determine Gene Function . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .         237
" ~* D$ m+ d1 Z( S$ K5 NJonathon E. Smith and Burton H. Bluhm* e2 J: \+ c! ~5 u2 ?" ]3 D
19 Tapping Genomics to Unravel Ectomycorrhizal Symbiosis . . . . . . . . . . . . . . . . . .         2499 f, B. E+ F/ Y6 I
Jonathan M. Plett, Barbara Montanini, Annegret Kohler,; {/ k; p6 n5 Y5 a! f( o
Simone Ottonello, and Francis Martin
& ]( U( |2 W5 }  `Index . 2832 V  p( j8 ]5 H4 O( n8 e

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