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本帖最后由 细胞海洋 于 2013-5-3 09:43 编辑 7 z% K) B I$ {+ d% R4 g+ s! D" u
( j9 Y) c5 `/ _+ Z8 F# C$ E4 W$ dFungal Genomics
2 _2 U2 y9 V- o$ z* `Methods and Protocols& C- M% z. C ]$ v3 ?- X
Series: Methods in Molecular Biology, Vol. 722
% ~# L' p" s) O* w6 pXu, Jin-Rong; Bluhm, Burton H. (Eds.)
* r3 q' l% }* \3 W6 h$ [0 _2011, XI, 285p. 29 illus..
9 t) Q" o+ n g0 Z7 ?5 cA product of Humana Press
" F9 @. B4 y3 D& Y! w" {" M8 Y. P4 l+ G) V1 i: ~3 A9 J: q9 _; g
1 Genome Sequencing and Assembly . . . . . . . . . . . . . . . . . . 1
$ F0 |: {( ^1 ^( f. @4 GManfred G. Grabherr, Evan Mauceli, and Li-Jun Ma8 a& C: X$ g( C; L+ g4 J
2 Targeted Cloning of Fungal Telomeres . . . . . . . . . . . 11
/ z' k- D8 B, }" Z/ ~6 wMark L. Farman2 v( S$ P; g2 j
3 Identification and Annotation of Repetitive Sequences in Fungal Genomes . 33
$ _2 ]$ ~+ Q: ~. q: YBraham Dhillon and Stephen B. Goodwin/ [4 ^& Z4 C; F5 _
4 Next-Generation Sequencing and Potential Applications in Fungal Genomics . . 51
9 P; U ^8 A, @) J6 p0 U9 L* gPhillip SanMiguel [1 f: G. X3 K* M0 C# O6 Q
5 Getting the Most Out of Your Fungal Microarray Data:
: `1 Y$ n- X8 C" p/ i: d0 J) HTwo Cost- and Time-Effective Methods . . . . . . . . . . . . . . 61
& d* S1 s- L/ R3 h) {* D8 \2 HSandra M. Mathioni, André Beló, Jeffrey P. Townsend,
7 f. j6 L: c* Band Nicole M. Donofrio2 ^8 W% x9 p1 d4 [( s& G
6 Fusarium graminearum from Expression Analysis to Functional Assays . . . . . 798 k% _; w& @1 h, n6 Y$ P7 A9 K" H
Heather E. Hallen-Adams, Brad L. Cavinder, and Frances Trail
) v$ F) E# A B. M* f5 F0 j: N7 EST Analysis Pipeline: Use of Distributed Computing Resources . . . . . . . . . 103
, c+ R3 C. u$ U# M) m8 `) ?Francisco Javier González and Juan Antonio Vizcaíno! G0 D L8 V1 K- F4 D, u5 z
8 The Application of ChIP-chip Analysis in the Rice Blast Pathogen . . . . . . 121& N4 E$ f6 I4 q: }- e
Soonok Kim and Thomas K. Mitchell* R0 c+ z$ Y, v2 O
9 Proteome Studies of Filamentous Fungi . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 133' H6 `$ q+ ~4 g" E/ {; @$ d) M
Scott E. Baker and Ellen A. Panisko
2 }% ?5 t( A) L* G/ X7 |+ h( p5 E10 A Bioinformatics Pipeline for Sequence-Based Analyses' R* L: @8 P- }" J' o! h
of Fungal Biodiversity . . . . . . . . . . . . . . . 141
! H x$ t! u5 M0 C3 [; lD. Lee Taylor and Shawn Houston
$ i6 b- j1 i; ^$ m# e6 H+ F11 Identifying Protein Complexes by Affinity Purification
) S9 V4 N0 B, R3 I' o( U- U& ]4 Y. xand Mass Spectrometry Analysis in the Rice Blast Fungus . . . . . . . . . . . . . . . . . . 157
0 e6 q6 f5 u8 C5 F' GWende Liu, Anton Iliuk, Andy Tao, and Shengli Ding
0 e6 z2 ~) S) `! h& W. |' k) T12 Large Scale Identification of Genes Involved in Plant–Fungal
$ A/ R( F2 u% ~Interactions Using Illumina’s Sequencing-by-Synthesis Technology . . . . . . . . . . 167% r4 f$ {; W' v `' K: R) K+ m
R.C. Venu, Yuan Zhang, Brian Weaver, Peter Carswell,- o, n5 C" ^/ W7 x# M( p" T4 I
Thomas K. Mitchell, Blake C. Meyers, Michael J. Boehm,
9 d L; a) T/ a, i: @9 Wand Guo-Liang Wang( E! }5 j$ Q% l* }; s
13 High-Throughput Production of Gene Replacement Mutants
7 F4 T3 \/ D) [) F7 E, gin Neurospora crassa . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 179
o( K- h3 U; N' PGyungsoon Park, Hildur V. Colot, Patrick D. Collopy,' q+ q \3 K A. x ?6 v( e
Svetlana Krystofova, Christopher Crew, Carol Ringelberg,
- a- w- S2 A$ c3 tLiubov Litvinkova, Lorena Altamirano, Liande Li, Susan Curilla,
+ J* d7 K/ ^, ]9 h- CWei Wang, Norma Gorrochotegui-Escalante, Jay C. Dunlap, C0 _1 m l+ ?5 z
and Katherine A. Borkovich/ ?" ~6 |) l) C; B' @$ o" k& r
14 Phenotypic Analysis of Neurospora crassa Gene Deletion Strains . . . . . . . . . . . . . . 191. Y/ R/ B! C3 L& y0 {- x! F
Gloria E. Turner
: q7 H" @% O& {15 Efficient Approaches for Generating GFP Fusion and Epitope-Tagging$ d: c6 d4 S6 C* c/ u! h
Constructs in Filamentous Fungi . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 199
+ A N0 V' Q, r3 Y5 PXiaoying Zhou, Guotian Li, and Jin-Rong Xu
/ F5 c9 x& [4 }$ D7 F9 `4 e16 Large-Scale Insertional Mutagenesis in Magnaporthe oryzae
4 [& Z3 l" e$ A! _7 {% y# l5 Tby Agrobacterium tumefaciens-Mediated Transformation . . . . . . . . . . . . . . . . . . . 2137 U$ f: Y- d8 P1 u* T3 m
Xiao-Lin Chen, Jun Yang, and You-Liang Peng& E$ a3 x% n; {- @0 D3 t
17 Molecular Methods for Studying the Cryphonectria parasitica – Hypovirus
2 G, F% J" d# IExperimental System . . . . . . . . . . . . . . . 225/ z$ _+ l! Z' ~+ Y* k h
Angus L. Dawe, Rong Mu, Gloricelys Rivera, and Joanna A. Salamon
$ K! T9 Z# K2 ]18 Metabolic Fingerprinting in Fusarium verticillioides
/ f5 n1 ^4 X! [9 yto Determine Gene Function . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 237* `. s0 }7 {! V* `, W5 Q2 _( l& d
Jonathon E. Smith and Burton H. Bluhm* ^8 D: C" X! H: X/ ^
19 Tapping Genomics to Unravel Ectomycorrhizal Symbiosis . . . . . . . . . . . . . . . . . . 249
M( A1 s1 j( F, @Jonathan M. Plett, Barbara Montanini, Annegret Kohler,
. Z% Z$ p9 K; M1 f3 y; v3 QSimone Ottonello, and Francis Martin6 M5 g9 ]+ V- ?3 m( X+ w
Index . 2830 G, @8 |) `( C% L
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