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本帖最后由 细胞海洋 于 2013-5-3 09:43 编辑
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Fungal Genomics
) k$ a; A9 k$ i/ j) ~2 n9 JMethods and Protocols
9 i9 c* L% H# V: f' H1 ^Series: Methods in Molecular Biology, Vol. 722
1 @# {$ T$ l+ w! H) ]) f" eXu, Jin-Rong; Bluhm, Burton H. (Eds.)
* n- \8 W- y& V" F! n* O5 O2011, XI, 285p. 29 illus..: y5 p' W+ y2 _( i) B& |
A product of Humana Press
3 o4 s8 E: d# t/ t8 N0 k+ M( B/ S, E, q8 V- }' J/ q
1 Genome Sequencing and Assembly . . . . . . . . . . . . . . . . . . 1/ L6 z% L2 _ \8 s: l I [
Manfred G. Grabherr, Evan Mauceli, and Li-Jun Ma
: j7 L5 q) D2 l$ T% W8 ^3 C+ ]2 Targeted Cloning of Fungal Telomeres . . . . . . . . . . . 11
6 t/ m6 X& T% ^$ I: m0 AMark L. Farman
0 [; Q: n! c, W& c9 z/ j; k3 Identification and Annotation of Repetitive Sequences in Fungal Genomes . 33( M9 s# |* D7 X* T) X8 A P
Braham Dhillon and Stephen B. Goodwin
4 g: A9 o. i* V+ d; O2 ?4 Next-Generation Sequencing and Potential Applications in Fungal Genomics . . 51, {) h! Y$ h A; r" n
Phillip SanMiguel# ~5 }8 E( {5 n4 o1 I$ T
5 Getting the Most Out of Your Fungal Microarray Data:
- \5 O& q" ]! z: N2 b0 [8 TTwo Cost- and Time-Effective Methods . . . . . . . . . . . . . . 61
9 R ^# F+ D" _* ~5 v$ x+ [Sandra M. Mathioni, André Beló, Jeffrey P. Townsend,
1 X: Z1 T! B" r( {3 l1 s6 eand Nicole M. Donofrio0 T1 o8 p; C7 ~' h) i) ]
6 Fusarium graminearum from Expression Analysis to Functional Assays . . . . . 79: C/ m. e7 `6 b2 E5 h8 g, R8 [
Heather E. Hallen-Adams, Brad L. Cavinder, and Frances Trail6 R g6 L' C( Z+ F+ M1 I
7 EST Analysis Pipeline: Use of Distributed Computing Resources . . . . . . . . . 103
! o# w* `* A4 @8 V3 H( u; b# F$ ~' wFrancisco Javier González and Juan Antonio Vizcaíno: h1 ^2 n. U$ `3 `4 M- _$ d
8 The Application of ChIP-chip Analysis in the Rice Blast Pathogen . . . . . . 121
) r6 b4 C' s/ f4 X0 U; q$ b" ISoonok Kim and Thomas K. Mitchell- y3 @6 B* _- {+ i2 U6 d) w
9 Proteome Studies of Filamentous Fungi . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 133
" d8 Q/ {: r( h0 \6 VScott E. Baker and Ellen A. Panisko
8 F6 L1 M, t7 E+ d1 T$ E10 A Bioinformatics Pipeline for Sequence-Based Analyses
& K6 g5 U9 f, Z9 Z. _ ]: bof Fungal Biodiversity . . . . . . . . . . . . . . . 141
+ A( v8 e+ d& u, o. I/ ?. A5 K0 N! cD. Lee Taylor and Shawn Houston
) |& A) g0 g7 ^9 @8 b11 Identifying Protein Complexes by Affinity Purification
+ D$ }5 {- o. b# {" eand Mass Spectrometry Analysis in the Rice Blast Fungus . . . . . . . . . . . . . . . . . . 157
: N4 D$ B* L2 s) |4 m9 ?+ U: _Wende Liu, Anton Iliuk, Andy Tao, and Shengli Ding
( A2 \9 v! ]9 B8 V# P: l' @9 O12 Large Scale Identification of Genes Involved in Plant–Fungal
, f$ i j$ _, W* ?Interactions Using Illumina’s Sequencing-by-Synthesis Technology . . . . . . . . . . 1673 M! p- y2 C H$ `& h
R.C. Venu, Yuan Zhang, Brian Weaver, Peter Carswell,4 m' q0 u; o% T: U
Thomas K. Mitchell, Blake C. Meyers, Michael J. Boehm,
0 w, H2 y; a- k9 vand Guo-Liang Wang) }2 {# w! D3 ^ o! R2 J5 ?
13 High-Throughput Production of Gene Replacement Mutants7 h- w- d5 R4 A
in Neurospora crassa . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 179& I$ w1 {7 \! [/ a% ~ X
Gyungsoon Park, Hildur V. Colot, Patrick D. Collopy,
7 i/ b1 w. A2 HSvetlana Krystofova, Christopher Crew, Carol Ringelberg,4 G- t* L% t, y
Liubov Litvinkova, Lorena Altamirano, Liande Li, Susan Curilla,0 A8 w, {- M( h1 C6 m+ L, S: D
Wei Wang, Norma Gorrochotegui-Escalante, Jay C. Dunlap,
( m" @' ?+ J; z5 Eand Katherine A. Borkovich
% M; \2 b( _. p/ ?1 [% p f14 Phenotypic Analysis of Neurospora crassa Gene Deletion Strains . . . . . . . . . . . . . . 191
( L, G/ d$ {8 N) WGloria E. Turner8 |8 r9 D# U: |4 f$ u/ J
15 Efficient Approaches for Generating GFP Fusion and Epitope-Tagging
+ ]1 h( R, g5 p3 j! E% {7 sConstructs in Filamentous Fungi . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 199! J* _$ l+ W' Q! `
Xiaoying Zhou, Guotian Li, and Jin-Rong Xu# D" M! x( ^! P7 S3 s0 o
16 Large-Scale Insertional Mutagenesis in Magnaporthe oryzae. H3 B! {7 X. n5 H6 i( n* S6 u5 ?
by Agrobacterium tumefaciens-Mediated Transformation . . . . . . . . . . . . . . . . . . . 2131 Q! m9 i# U9 Z( D* u% D# v6 ^
Xiao-Lin Chen, Jun Yang, and You-Liang Peng
* N' D+ P2 l8 o+ h5 Q0 r17 Molecular Methods for Studying the Cryphonectria parasitica – Hypovirus+ A; `, i5 O6 _# M
Experimental System . . . . . . . . . . . . . . . 225
9 i: p) m2 @$ P" @+ vAngus L. Dawe, Rong Mu, Gloricelys Rivera, and Joanna A. Salamon2 A1 T P$ \/ e7 n |5 t
18 Metabolic Fingerprinting in Fusarium verticillioides$ g. l$ o: E7 v( A5 b$ \7 _& T
to Determine Gene Function . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 237 G4 R6 k/ f& t; ~+ g) R$ |9 }
Jonathon E. Smith and Burton H. Bluhm; U" o5 B0 U$ S, M$ _: w% t
19 Tapping Genomics to Unravel Ectomycorrhizal Symbiosis . . . . . . . . . . . . . . . . . . 249+ z; d! N" [7 F) r. D
Jonathan M. Plett, Barbara Montanini, Annegret Kohler,. \' j& ^3 _9 k$ s3 u/ x+ t* K
Simone Ottonello, and Francis Martin
6 c R& a. p4 Y0 f/ JIndex . 283, {+ c9 r! Z X- v8 S
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