[表观宝典] 经典文献汇总

恒宇

1. Orlando V. Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation. Trends Biochem Sci 2000; 25: 99-104.
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2. McGhee JD, von Hippel PH. Formaldehyde as a probe of DNA structure. II. Reaction with endocyclic imino groups of DNA bases. Biochemistry 1975; 14: 1297-1303.
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3. McGhee JD, von Hippel PH. Formaldehyde as a probe of DNA structure. I. Reaction with exocyclic amino groups of DNA bases. Biochemistry 1975; 14: 1281-1296.* N) G8 N6 z2 ~: Y0 G

  h9 g6 [+ A; Q: E( r, ]$ x4. Fujita N, Wade PA. Use of bifunctional cross-linking reagents in mapping genomic distribution of chromatin remodeling complexes. Methods 2004; 33: 81-85." s7 k+ h, X( X  k/ `2 P! j

- ]4 X1 t9 A5 B+ @$ {( [5. Thorstenson YR, Hunicke-Smith SP, Oefner PJ, Davis RW. An automated hydrodynamic process for controlled, unbiased DNA shearing. Genome Res 1998; 8: 848-855.; v) V. v. x5 v# H+ G& x  ^- o( D
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6. O'Neill LP, VerMilyea MD, Turner BM. Epigenetic characterization of the early embryo with a chromatin immunoprecipitation protocol applicable to small cell populations. Nat Genet 2006; 38: 835-841.$ g1 C2 V1 }; k0 |0 ]" o

: ]" [3 I. W' S, ?# r2 L7. Buck MJ, Lieb JD. ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments. Genomics 2004; 83: 349-360.- |4 m% @8 @) D9 ^) T( S; O
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8. Weinmann AS et al. Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis. Genes Dev 2002; 16: 235-244. 4 v/ |  C& z# {4 Q! \& H# E+ `
9. Warrington JA, Nair A, Mahadevappa M, Tsyganskaya M. Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes. Physiol Genomics 2000; 2: 143-147.
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10. Waterborg JH. Sequence analysis of acetylation and methylation in two histone H3 variants of alfalfa. J Biol Chem 1990; 265: 17157-17161.& v5 C1 E; I3 p1 }: }4 V

$ n% q! k: Z( e0 I11. Waterborg JH. Multiplicity of Histone H3 Variants in Wheat, Barley, Rice, and Maize. Plant Physiol 1991; 96: 453-458.
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12. Waterborg JH. Existence of two histone H3 variants in dicotyledonous plants and correlation between their acetylation and plant genome size. Plant Mol Biol 1992; 18: 181-187." v! g% B8 Z- ]4 H0 [
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13. Waterborg JH. Identification of five sites of acetylation in alfalfa histone H4. Biochemistry 1992; 31: 6211-6219.2 [' U( Q7 m  F, Q- r1 ^

. d" T% p. V; o5 a% O1 l- p14. Waterborg JH. Dynamic methylation of alfalfa histone H3. J Biol Chem 1993; 268: 4918-4921.
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  f8 `9 a0 u* A  H0 _15. Waterborg JH. Histone synthesis and turnover in alfalfa. Fast loss of highly acetylated replacement histone variant H3.2. J Biol Chem 1993; 268: 4912-4917.
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16. Waterborg JH. Dynamics of histone acetylation in vivo. A function for acetylation turnover? Biochem Cell Biol 2002; 80: 363-378.6 c7 _0 R" U9 l' d( y2 K
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17. Waterborg JH, Kapros T. Kinetic analysis of histone acetylation turnover and Trichostatin A induced hyper- and hypoacetylation in alfalfa. Biochem Cell Biol 2002; 80: 279-293.
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2 k7 q' b! d9 P* Y) @* s* ?  o18. Wang H, Tang W, Zhu C, Perry SE. A chromatin immunoprecipitation (ChIP) approach to isolate genes regulated by AGL15, a MADS domain protein that preferentially accumulates in embryos. Plant J 2002; 32: 831-843.
, s8 G' u. I* {& I- \$ u/ iCell, Vol. 115, 751–763, December 12, 2003, Copyright 2003 by Cell Press
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$ b4 b. k1 G9 C6 B/ aTitle: Estrogen Receptor-  Directs Ordered, Cyclical, and Combinatorial Recruitment+ a" _' r- l' x+ U) N8 y
of Cofactors on a Natural Target Promoter.* N, L) N9 K9 E$ }5 V; U
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使用了ChIP, reChIP, IP及PCR，RP-PCR技术。

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