[表观宝典] 经典文献汇总

恒宇

1. Orlando V. Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation. Trends Biochem Sci 2000; 25: 99-104./ a' w, B- p) c0 p$ Y5 o
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2. McGhee JD, von Hippel PH. Formaldehyde as a probe of DNA structure. II. Reaction with endocyclic imino groups of DNA bases. Biochemistry 1975; 14: 1297-1303.+ Z& ?( Y& [# E  i9 k

% K5 C, l$ Q& y5 _3. McGhee JD, von Hippel PH. Formaldehyde as a probe of DNA structure. I. Reaction with exocyclic amino groups of DNA bases. Biochemistry 1975; 14: 1281-1296.8 \1 j- I7 O4 B
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4. Fujita N, Wade PA. Use of bifunctional cross-linking reagents in mapping genomic distribution of chromatin remodeling complexes. Methods 2004; 33: 81-85.
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) r% G- x8 r. Y4 i' w7 b5 l% r5. Thorstenson YR, Hunicke-Smith SP, Oefner PJ, Davis RW. An automated hydrodynamic process for controlled, unbiased DNA shearing. Genome Res 1998; 8: 848-855.
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1 b0 I) p+ D3 E" ]! b7 ~+ \6. O'Neill LP, VerMilyea MD, Turner BM. Epigenetic characterization of the early embryo with a chromatin immunoprecipitation protocol applicable to small cell populations. Nat Genet 2006; 38: 835-841.
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6 N- Q: ^# O# ?3 y5 Q7 b0 @7. Buck MJ, Lieb JD. ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments. Genomics 2004; 83: 349-360.
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8. Weinmann AS et al. Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis. Genes Dev 2002; 16: 235-244. # A8 y4 k' B6 ^" B9 v. o8 k3 d* n
9. Warrington JA, Nair A, Mahadevappa M, Tsyganskaya M. Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes. Physiol Genomics 2000; 2: 143-147.; p2 b  a* Q! o: W( ^

1 |; b3 c9 H, C  e& i$ w10. Waterborg JH. Sequence analysis of acetylation and methylation in two histone H3 variants of alfalfa. J Biol Chem 1990; 265: 17157-17161.
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11. Waterborg JH. Multiplicity of Histone H3 Variants in Wheat, Barley, Rice, and Maize. Plant Physiol 1991; 96: 453-458.
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12. Waterborg JH. Existence of two histone H3 variants in dicotyledonous plants and correlation between their acetylation and plant genome size. Plant Mol Biol 1992; 18: 181-187.
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) E' }# I- a% x& o/ Y$ v13. Waterborg JH. Identification of five sites of acetylation in alfalfa histone H4. Biochemistry 1992; 31: 6211-6219.
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- j/ |  D1 s7 p14. Waterborg JH. Dynamic methylation of alfalfa histone H3. J Biol Chem 1993; 268: 4918-4921.
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# m! {4 k) V( C! J  v+ R  E15. Waterborg JH. Histone synthesis and turnover in alfalfa. Fast loss of highly acetylated replacement histone variant H3.2. J Biol Chem 1993; 268: 4912-4917.
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/ Q9 t$ ~) z2 d) b5 W1 G4 d6 _16. Waterborg JH. Dynamics of histone acetylation in vivo. A function for acetylation turnover? Biochem Cell Biol 2002; 80: 363-378.
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17. Waterborg JH, Kapros T. Kinetic analysis of histone acetylation turnover and Trichostatin A induced hyper- and hypoacetylation in alfalfa. Biochem Cell Biol 2002; 80: 279-293.% B. s( B2 \) V9 C; ~3 U3 E
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18. Wang H, Tang W, Zhu C, Perry SE. A chromatin immunoprecipitation (ChIP) approach to isolate genes regulated by AGL15, a MADS domain protein that preferentially accumulates in embryos. Plant J 2002; 32: 831-843.
0 k. F  ]0 j5 ECell, Vol. 115, 751–763, December 12, 2003, Copyright 2003 by Cell Press
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2 M6 ?- q" {0 I" A' C! s# V" A% M) t) F; YTitle: Estrogen Receptor-  Directs Ordered, Cyclical, and Combinatorial Recruitment, w3 K# L+ j$ r1 @5 d+ {
of Cofactors on a Natural Target Promoter.0 s$ L4 T1 d2 w7 U2 X  R4 s

8 q9 i8 x, ^, F7 P7 }/ q. _3 T使用了ChIP, reChIP, IP及PCR，RP-PCR技术。

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