DNA甲基化分析软件汇总

Tlexander

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+ n: n5 ]9 x' {) r  NBeadScan: Analysing data from Illumina BeadArrays
: s4 C! `9 ]& Y8 w. ~; `8 NBisReadMapper: Library-free methylation sequencing with bisulfite padlock
5 O' N- \! {  S: ~7 H6 }BRAT: Highly configurable and well-documented three‑letter bisulphite aligner9 j) C, W1 U+ ?
BSMAP: Probably the most widely used wild-card bisulphite aligner0 T8 S* }4 g# q0 |. I- Q* D$ D% e
BSmooth is a pipeline for analyzing WGBS data: aligning, quality control, and identifying DMRs.
6 E/ O2 m  n5 G' s3 V1 X3 dComBat: R script for correcting known or suspected batch effects
' v( {7 A+ K9 T: `DMAP: differential methylation analysis package for RRBS and WGBS data.
0 G5 x9 {! V3 N. rGenomeStudio: GenomeStudio Methylation Module v1.8
! B2 s0 \) C2 c& u5 M9 l: NGSNAP: Wild-card bisulphite aligner included in a widely used general-purpose, h* Q# T9 f7 m
isva: R package for batch effect correction using an algorithm! S8 v1 ?4 V  J. |/ c& J- L, L7 y4 F
MethylCoder: Three‑letter bisulphite aligner that can be used with either Bowtie and Bowtie2
3 Q* S1 Z6 {) O6 i* Xmethylumi: R/Bioconductor package for Infinium data normalization5 F5 [3 r8 \6 H; J/ U
minfi: R/Bioconductor package for Infinium data normalization, analysis
5 G8 w3 T& N: b3 J: w1 PPash: Wild-card bisulphite aligner included in a general-purpose alignment tool
* W8 Y, X; E+ K) E0 i& URMAP: Wild-card bisulphite aligner included in a general-purpose alignment tool, i3 p) Y! I5 B. Q" |
RnBeads: R package providing a software pipeline for Infinium data normalization,
+ j& ?/ G( w7 Q. M6 p/ j5 }8 ?RRBSMAP: Variant of BSMAP that is specialized on reduced-representation
4 A) M9 V( E* V" g  Bsegemehl: Wild-card bisulphite aligner included in a general-purpose alignment tool
, d6 [9 Q$ ?" H9 `SVA: R/Bioconductor package for correcting batch effects
9 S5 u3 X. `  s) e2 w2 jmethyLiftover: cross-platform DNA methylation data integration6 `7 z0 q% o% }8 n( V$ j  @& `' E
dariober's methylation-cafe: https://github.com/dariober/bioinformatics-cafe
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gxbzjznn

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yeshch

顶一下！