DNA甲基化分析软件汇总

Tlexander

. |: u" r9 {1 u9 X* F* g8 }https://www.biostars.org/p/164929/0 j" Z' S9 z' n2 g1 \
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BeadScan: Analysing data from Illumina BeadArrays
0 U( z& m" q/ w3 y" J1 g& CBisReadMapper: Library-free methylation sequencing with bisulfite padlock
( l+ J: ?9 n. p" qBRAT: Highly configurable and well-documented three‑letter bisulphite aligner! \4 h% _  |* W8 O: R* ^! R9 C% M) O
BSMAP: Probably the most widely used wild-card bisulphite aligner% ]) j0 C1 o# L  Q; b
BSmooth is a pipeline for analyzing WGBS data: aligning, quality control, and identifying DMRs.2 m" s, O/ M8 a
ComBat: R script for correcting known or suspected batch effects
; H+ Z! M/ e; \9 _- {0 uDMAP: differential methylation analysis package for RRBS and WGBS data.
8 ]* ~& I- o% l5 YGenomeStudio: GenomeStudio Methylation Module v1.8
+ r& ?1 t7 @# N: n9 NGSNAP: Wild-card bisulphite aligner included in a widely used general-purpose+ Q1 |. z* Z, v$ Z7 h! t6 I
isva: R package for batch effect correction using an algorithm" h: z8 G0 U8 m  _
MethylCoder: Three‑letter bisulphite aligner that can be used with either Bowtie and Bowtie2
" R! S: K1 z- s2 p: \8 P# x* jmethylumi: R/Bioconductor package for Infinium data normalization
* W$ q! F1 l1 Z) J! T5 Vminfi: R/Bioconductor package for Infinium data normalization, analysis. q# ~1 [" ?. a; Y/ b6 o/ ?
Pash: Wild-card bisulphite aligner included in a general-purpose alignment tool $ E, ]: }1 O9 M
RMAP: Wild-card bisulphite aligner included in a general-purpose alignment tool
1 t) {) S7 N" v' iRnBeads: R package providing a software pipeline for Infinium data normalization,( H' e' k" T# [; X" z( n) H  R0 }
RRBSMAP: Variant of BSMAP that is specialized on reduced-representation
+ c" q6 a& Q  ]4 g: y5 @segemehl: Wild-card bisulphite aligner included in a general-purpose alignment tool& H) G) q6 j, f2 i
SVA: R/Bioconductor package for correcting batch effects
; L; H6 ]) \9 u% s6 y8 _: p2 G! ^. vmethyLiftover: cross-platform DNA methylation data integration0 M# S; Z) e9 f! f$ P  Z$ Y
dariober's methylation-cafe: https://github.com/dariober/bioinformatics-cafe. i3 c1 f- i6 ^& p

yeshch

顶一下！

gxbzjznn

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