[表观宝典] 经典文献汇总

恒宇

1. Orlando V. Mapping chromosomal proteins in vivo by formaldehyde-crosslinked-chromatin immunoprecipitation. Trends Biochem Sci 2000; 25: 99-104.
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4 A5 q1 B+ U" L* R- Z, T2. McGhee JD, von Hippel PH. Formaldehyde as a probe of DNA structure. II. Reaction with endocyclic imino groups of DNA bases. Biochemistry 1975; 14: 1297-1303.
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3. McGhee JD, von Hippel PH. Formaldehyde as a probe of DNA structure. I. Reaction with exocyclic amino groups of DNA bases. Biochemistry 1975; 14: 1281-1296.
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4. Fujita N, Wade PA. Use of bifunctional cross-linking reagents in mapping genomic distribution of chromatin remodeling complexes. Methods 2004; 33: 81-85.
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1 J  r, b, R' c4 Q+ p6 C5. Thorstenson YR, Hunicke-Smith SP, Oefner PJ, Davis RW. An automated hydrodynamic process for controlled, unbiased DNA shearing. Genome Res 1998; 8: 848-855.
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1 i5 S6 z/ v5 u0 U0 u6. O'Neill LP, VerMilyea MD, Turner BM. Epigenetic characterization of the early embryo with a chromatin immunoprecipitation protocol applicable to small cell populations. Nat Genet 2006; 38: 835-841.
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+ l  g" A0 R. i6 }0 d7. Buck MJ, Lieb JD. ChIP-chip: considerations for the design, analysis, and application of genome-wide chromatin immunoprecipitation experiments. Genomics 2004; 83: 349-360.6 A: M& c4 J2 B: Q! a% j
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8. Weinmann AS et al. Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis. Genes Dev 2002; 16: 235-244. % y6 k1 k) M. D* J; R4 S
9. Warrington JA, Nair A, Mahadevappa M, Tsyganskaya M. Comparison of human adult and fetal expression and identification of 535 housekeeping/maintenance genes. Physiol Genomics 2000; 2: 143-147.6 i& ?% M0 ?/ p) Y* Y

, l7 @  e) g! L' S5 g4 \10. Waterborg JH. Sequence analysis of acetylation and methylation in two histone H3 variants of alfalfa. J Biol Chem 1990; 265: 17157-17161.1 b( d0 e% [3 Z# R$ ^

) _; ?& e/ u6 W7 j11. Waterborg JH. Multiplicity of Histone H3 Variants in Wheat, Barley, Rice, and Maize. Plant Physiol 1991; 96: 453-458.( X1 p% v" C" G. u) N

0 \/ l9 J( Y: l- Q4 o5 b12. Waterborg JH. Existence of two histone H3 variants in dicotyledonous plants and correlation between their acetylation and plant genome size. Plant Mol Biol 1992; 18: 181-187.
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13. Waterborg JH. Identification of five sites of acetylation in alfalfa histone H4. Biochemistry 1992; 31: 6211-6219.2 @- N% ]- |$ W" r6 i. Q) A& K

, ^6 x! Y% t  }5 v. T0 f2 m. I14. Waterborg JH. Dynamic methylation of alfalfa histone H3. J Biol Chem 1993; 268: 4918-4921.
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1 v/ {4 R8 _2 F( y' n3 h* u8 k15. Waterborg JH. Histone synthesis and turnover in alfalfa. Fast loss of highly acetylated replacement histone variant H3.2. J Biol Chem 1993; 268: 4912-4917.( d- H, u3 p9 l, _& o

+ f/ J1 @; m+ k% I16. Waterborg JH. Dynamics of histone acetylation in vivo. A function for acetylation turnover? Biochem Cell Biol 2002; 80: 363-378.' t3 F! v! }( C- P
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17. Waterborg JH, Kapros T. Kinetic analysis of histone acetylation turnover and Trichostatin A induced hyper- and hypoacetylation in alfalfa. Biochem Cell Biol 2002; 80: 279-293.; E) j* k2 r- N7 W% d( ^. ]

+ n* |4 W& U3 [* b18. Wang H, Tang W, Zhu C, Perry SE. A chromatin immunoprecipitation (ChIP) approach to isolate genes regulated by AGL15, a MADS domain protein that preferentially accumulates in embryos. Plant J 2002; 32: 831-843.
3 J( E0 R: `8 U( M% y# X1 l4 OCell, Vol. 115, 751–763, December 12, 2003, Copyright 2003 by Cell Press9 g: b# g" V+ y

; Z0 k& T! T2 |3 h4 t) k$ gTitle: Estrogen Receptor-  Directs Ordered, Cyclical, and Combinatorial Recruitment
. W6 C9 D+ m. ]" jof Cofactors on a Natural Target Promoter.
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7 |% s6 p2 w4 K$ }4 F7 V- L使用了ChIP, reChIP, IP及PCR，RP-PCR技术。

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