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本帖最后由 细胞海洋 于 2013-5-3 09:43 编辑
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Fungal Genomics/ d, z* t0 ?* d1 _, Z! B c" a+ V
Methods and Protocols
' O) H6 X0 M! `& |' W8 I2 ^Series: Methods in Molecular Biology, Vol. 722) f' S2 I1 a7 _
Xu, Jin-Rong; Bluhm, Burton H. (Eds.)
' n" [ r2 N1 Z6 J& C- V3 f2011, XI, 285p. 29 illus..
2 Y$ G; q h) H% ^% pA product of Humana Press
+ x2 Y5 R+ a$ c O1 n, Z ^ Z+ Z) S( C4 ^% b- n/ ]
1 Genome Sequencing and Assembly . . . . . . . . . . . . . . . . . . 1/ T- l+ |9 i0 A" P7 o+ v, y
Manfred G. Grabherr, Evan Mauceli, and Li-Jun Ma
' w& P: Y8 B0 E% p# y2 Targeted Cloning of Fungal Telomeres . . . . . . . . . . . 11% v* p2 c3 J2 Z2 n( s
Mark L. Farman+ Z# R) m# a* }6 v( U! E |
3 Identification and Annotation of Repetitive Sequences in Fungal Genomes . 33* s2 N1 X$ y t; k
Braham Dhillon and Stephen B. Goodwin0 Z+ k& Q; t: a2 ~' Q) W% z# F
4 Next-Generation Sequencing and Potential Applications in Fungal Genomics . . 51- D2 B3 s1 ?: u& _3 Z$ p
Phillip SanMiguel) z* M) y+ L$ X' Q( d# ^/ l
5 Getting the Most Out of Your Fungal Microarray Data:6 t9 Y' | P% ?3 d
Two Cost- and Time-Effective Methods . . . . . . . . . . . . . . 61
) ^: X" F- D9 x; h7 n j7 b1 @Sandra M. Mathioni, André Beló, Jeffrey P. Townsend, Z+ y; J4 K- J& L" ^$ l
and Nicole M. Donofrio
" N1 _, x; G9 z8 r, \4 x3 K2 z. S6 Fusarium graminearum from Expression Analysis to Functional Assays . . . . . 79. g% [6 ]6 Q2 j; Z/ U5 ?
Heather E. Hallen-Adams, Brad L. Cavinder, and Frances Trail
! r0 n" z# v$ @% Z7 EST Analysis Pipeline: Use of Distributed Computing Resources . . . . . . . . . 103
! F3 ]; K' v7 }9 MFrancisco Javier González and Juan Antonio Vizcaíno
1 r0 a& v: |; F/ E8 The Application of ChIP-chip Analysis in the Rice Blast Pathogen . . . . . . 121
% l9 D( w7 M( A4 K- i' ^3 P0 PSoonok Kim and Thomas K. Mitchell
& E" S; b9 z6 R9 Proteome Studies of Filamentous Fungi . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 133
) s5 o9 q* Z# D# oScott E. Baker and Ellen A. Panisko# z1 K8 G8 b, T! V+ }. Q, I
10 A Bioinformatics Pipeline for Sequence-Based Analyses
, I& T- c0 j8 }+ W0 qof Fungal Biodiversity . . . . . . . . . . . . . . . 1416 A& o! P0 N0 u0 {* y2 ^
D. Lee Taylor and Shawn Houston3 }' M- y( \' n+ p4 {( k
11 Identifying Protein Complexes by Affinity Purification% c/ r/ M q. o( O: ?1 \
and Mass Spectrometry Analysis in the Rice Blast Fungus . . . . . . . . . . . . . . . . . . 157
; t$ W5 {2 D0 L, CWende Liu, Anton Iliuk, Andy Tao, and Shengli Ding
& b* d0 L3 g! L/ g, I12 Large Scale Identification of Genes Involved in Plant–Fungal3 m/ V6 N% @7 x/ Y. S* q
Interactions Using Illumina’s Sequencing-by-Synthesis Technology . . . . . . . . . . 167
! u* s# y ?+ O- W0 Q8 GR.C. Venu, Yuan Zhang, Brian Weaver, Peter Carswell,
: {$ c: b! t8 @( {' n3 GThomas K. Mitchell, Blake C. Meyers, Michael J. Boehm,- b& V8 [2 V8 D3 e; d% c3 h0 D. v
and Guo-Liang Wang
/ T* T* i# z3 C1 H8 N7 a13 High-Throughput Production of Gene Replacement Mutants
" I: {" [6 K2 p% M: I) Win Neurospora crassa . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1795 T$ e' s) J3 |9 M5 ]; e
Gyungsoon Park, Hildur V. Colot, Patrick D. Collopy,. ?0 X* y/ @1 A6 | Z8 n5 H2 B
Svetlana Krystofova, Christopher Crew, Carol Ringelberg,1 B+ {. B( r7 B. S5 y
Liubov Litvinkova, Lorena Altamirano, Liande Li, Susan Curilla,7 C. {9 X7 E7 l% Y! T
Wei Wang, Norma Gorrochotegui-Escalante, Jay C. Dunlap,
8 U9 m3 ?# F, @0 n/ i9 T' L4 Tand Katherine A. Borkovich" O; N7 ]5 D" z" ^2 t
14 Phenotypic Analysis of Neurospora crassa Gene Deletion Strains . . . . . . . . . . . . . . 191
! y9 a N1 L" i$ S9 kGloria E. Turner
0 ]' ~ T- x; [' ^ v# [- w, y; t15 Efficient Approaches for Generating GFP Fusion and Epitope-Tagging
2 ]* X- S1 t0 I* j4 P W5 V7 e+ dConstructs in Filamentous Fungi . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 199
6 r: l8 c7 V* e: R) `Xiaoying Zhou, Guotian Li, and Jin-Rong Xu
! e8 Q& C9 T, U: x16 Large-Scale Insertional Mutagenesis in Magnaporthe oryzae
i) ~/ p$ s/ i# r# Kby Agrobacterium tumefaciens-Mediated Transformation . . . . . . . . . . . . . . . . . . . 213
. t7 w4 ]: b3 C9 M! YXiao-Lin Chen, Jun Yang, and You-Liang Peng( c7 v3 }, c6 B, D( R; u
17 Molecular Methods for Studying the Cryphonectria parasitica – Hypovirus
8 E! ~' |: b4 F+ [, w4 tExperimental System . . . . . . . . . . . . . . . 225 U- S% W" v9 Y0 `' M' p1 m
Angus L. Dawe, Rong Mu, Gloricelys Rivera, and Joanna A. Salamon
- `5 @8 Z7 S: i- o, {18 Metabolic Fingerprinting in Fusarium verticillioides) j: `: D' u3 J+ h- z# L
to Determine Gene Function . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 237
& t/ p2 O% [& x- gJonathon E. Smith and Burton H. Bluhm6 u! {" E4 o: O( b2 M0 m
19 Tapping Genomics to Unravel Ectomycorrhizal Symbiosis . . . . . . . . . . . . . . . . . . 249
" q. m& D* J/ H9 j5 j9 e3 OJonathan M. Plett, Barbara Montanini, Annegret Kohler,! h c3 `% {- e% K" w
Simone Ottonello, and Francis Martin% l9 ]& C! g: ^( Y8 A6 I9 M. h
Index . 283' J4 u' x: E6 \6 F$ N9 h9 i
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