《Mathematical Biology》，《Systems Biology》 & 《synthetic biology》

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1 i2 n' q# r. C* f$ O, H: M 《Mathematical Biology 》是一本生物数学，主要是微分方程方面的工具书。主要可以查询一些方程模型的生物背景。当然，该书也罗列了几乎所有的技术手段，和研究的方向和这些方向的所有文献中的最新结果。+ S' m. [& B( i+ W   《Mathematical Biology 》   《 Synthetic Biology  》与传统生物学通过解剖生命体以研究其内在构造的办法不同，合成生物学的研究方向完全是相反的，它是从最基本的要素开始一步步建立零部件。与基因工程把一个物种的基因延续、改变并转移至另一物种的作法不同，合成生物学的目的在于建立人工生物系统（artificial biosystem），让它们像电路一样运行。 * z% F' w& x' t, {3 {9 X2 ` 7 A; E* u# p3 K8 @1 {$ u % y9 M4 @/ b; X7 n6 V; {- @《Systems Biology》 从单基因向多基因、从单一层次向集成层次、从细胞向人整体的系统生物学的研究模式将成为本世纪肿瘤研究的主导方向。 7 K' v6 U6 ]0 R. E( Q' l # t& T' j- k* z; I ) k" f/ [1 `- i# dSociety for Mathematical BiologyEuropean Society for Mathematical and Theoretical BiologyJournal of Mathematical Biology(paper online: after 1996)Bulletin of Mathematical Biology(paper online: after 1998)IMA Journal of Mathematics Applied in Medicine and Biology(paper online: after 1996)Mathematical Biology at UBC(UBC, Vancouver, BC, Canada)Graduate Group in Population Biology(UC Davis)Center for Mathematics and Computation in the Life Sciences and Medicine(Duke University)Utah Math Biology Program(University of Utah)Vanderbilt University Biomath Study GroupUCLA Biomath HomepageBiomathematics at North Carolina State UniversityCentre for Mathematical Biology(a research institute in Oxford University, England)Mathematics Archives - Topics in Mathematics - Mathematical Biology(collection of links 1)UTK Mathematical Life Sciences Archives WWW Server - Home Page(collection of links 2)AIMS Links of Mathematical BiologyMatthiopoulosMATHEMATICS AND BIOLOGY: The Interface CHALLENGES AND OPPORTUNITIESWorld of BifurcationDfield and pplaneby John Polking from Rice UniversityODE Phase Plane Plotterfrom University of ColoradoPhase portraitfrom Penn State UniversityInteractive Differential Equationsfrom Addison Wesley Longman 1 G7 D6 l8 F" T1 s! i(This site has some incredible animations of ODE, we will see some in class)Java Applets for Chaos games!from Boston UniversityCancer and MathematicsEuler's MethodbyMathServ DE Toolkitfrom Vanderbilt UnivElectronic ZooSeparable ODEbyMathServ DE Toolkitfrom Vanderbilt UnivLinear ODEbyMathServ DE Toolkitfrom Vanderbilt UnivBernoulli ODEbyMathServ DE Toolkitfrom Vanderbilt UnivA 1999 CNN article on the carrying capacity of the EarthThe U.S. Census Bureau announcednew population projectionson Thursday, January 13, 2000.The International Society of Malthus(include hid original paper: Essay on the Principle of Population (1798))Biography of Pierre François VerhulsBoom and Bust Mathematics(an article about Verhulst's model)The Struggle for Existence - A Classic of Mathematical Biology and Ecologyby G.F. Gause (1934)Mathematical Biology I (AMATH 503)(University of Washington)Introduction to Mathematical Modeling (AMATH 383)(University of Washington)http://www.amath.washington.edu/courses/383-spring-2001/(University of Washington)Biomathematics 301(University of British Columbia)Spatio-Temporal Models in Ecology: an Introduction to Integro-Difference Equations(Utah State University)Quantitative Population Ecology(Virginia Tech)Math 3N3 Home Page(MaMaster University)A Course in Mathematical Biology(University of Montana)mat598f00(Arizona State University)642:338:03 Math Models Soc & Bio - Spring 01(Rutgers University)SCCC 411B, Spring, 1997(University of South Carolina)BIOL 763, Spring, 1999(University of South Carolina)math405.411(University of Tennessee)Mathematical Modeling Home Page(SUNY-IT)Mathematical Biology(University of Illinois Chicago)FW662 -- Wildlife Population Dynamics(Colorador State University)0 S; L' J6 H* K* C4 Y* Q' K1 [ People in Math Biology (Math Chemistry or Math Physics sometime) " w$ m6 H9 b" p+ t7 X5 X. q* C / G6 D# U! Z! Y, q' A A-H Fred Adler(University of Utah)  2 e5 M3 N- ?; g: F  ?) | Wolfgang Alt(University of Bonn, Germany)   S' m* N+ P9 L, q+ }7 W[size=+0]Robert Stephen Cantrell  (University of Miami)  * n9 c# ]/ e& T1 l, @ Carlos Castillo-Chavez (Conell University)  . @6 q" C5 L8 l9 L$ B2 H Carson Chow (University of  Pittiburgh)  * j5 D. \) ?0 Q J. M. Cushing (University of Arizona)  % i) q4 N4 r" ^4 ^1 a Emmanuele DiBenedetto (Vanderbilt University)   0 h) }7 f' c6 Q2 [9 D2 c9 XUlf Dieckmann 8 P' {, K& X+ P, L# j1 tPauline van den Driessche (U Victoria, Canada)   ( J; R/ c* K4 ~3 e. ^Leah Edelstein-Keshet (U British Columbia,Canada) 0 [+ }0 F6 p- O) w5 D  w$ F, i+ G Chris Eilbeck (Heriot-Watt University, Scotland) 1 h- E0 M7 k8 i4 hBard Ermentrout (University of  Pittiburgh)   4 @8 \1 X3 z: r  QIrving R. Epstein (Brandais University) * e( l; `4 z, k/ s( A: ? Zhilan Feng (Purdue University)  8 }4 R& {  D' F! r0 Y9 m, p Paul Fife (University of Utah)  ( G7 j; U1 ^$ c Gordon Fox (University of South Florida) + y( v- O; T, p9 w. G  EBill Gurney (University of Strathclyde, Scotland) 5 I3 K4 X! ~6 h3 j/ G: K( jThomas G. Hallam(University of Tennessee)   $ p. q; E$ q, ~3 W# I5 G2 d# d. uKarl P. Hadeler(Tübingen, Germany)+ A7 V4 r/ {2 b, N- ?* n7 L Alan Hastings (UC Davis) 9 u  h. D: |) r. n% NThomas Hillen (University of Alberta, Canada)   # X9 n' R+ s' R0 cVivian Hutson (University of Sheffield, UK)   ?% x6 q0 B. I' y4 T% QJosef Hofbauer (Universität Wien, Austria)  * ?' f5 q# `1 h8 J Frank C. Hoppensteadt(Arizona State University) ; K; C7 z/ `% t. }/ @, b6 G I-O Peter M. Kareiva(Princeton University)   9 B6 m8 U4 R- F( h' w6 [. y' _Tasso J. Kaper (Boston University) ' }9 y5 j  ?, x+ A8 | Jim Keener (University of Utah)   : S4 H: L0 d/ C. J3 |0 \Nancy Kopell (Boston University) 5 ^5 U6 q. Q, ~- uMark Kot(U of Washington)     ?' _- [8 O* B* Y  s$ QYang Kuang (Arizona State University)   % C5 s9 M; K" u' A& q& ZSuzanne Lenhart (University of Tennessee)   ) z; T8 c* p  j4 ~! YSimon Levin (Princeton University)   3 [8 b) g& l' `9 [6 s" e) NMark Lewis (University of Alberta, Canada)     P8 ~& G: u+ ]' ^Michael Yi Li (University of Alberta, Canada)  ' X8 t% }! O0 P Yuexian Li (U British Columbia,Canada)   o4 L$ [# N# `% k4 }8 J( W" c" SPhilip Maini (Oxford University, UK)  4 {; f3 w. I8 E Konstantin Mischaikow (Georgia Tech) ; B( c3 n$ b" E. q8 Z+ n, dJames D. Murray (U of Washington) % O, w% ~4 y5 O) e Thomas Nagylaki (University of Chicago)  2 T; }& R# ^% u7 X7 O% Z) t Mike Neubert(Woods Hole Ocean. Institution)  " e/ u6 ~0 N1 z, V Wei-Ming Ni(University of Minnesota) 9 b! K1 c' O2 e5 I1 e* A Hans G. Othmer (University of Minnesota)   # ~" K7 c7 h  f8 {% r0 n( F8 zQi Ouyang(Beijing University, China) 2 @5 t( z" s* c& n7 z9 p1 KKevin Painter (Heriot-Watt University, Scotland) 6 L' y: G' N! Q, {7 P& T James Powell (Utah State University)   ! ]" y2 B1 f$ dMary Pugh (University of Toronto, Canada) ; Q- }: }, k( P1 j4 i- r1 s" kHong Qian (U of Washington) 6 z+ }6 b) F3 Y% T , V; a+ P; V& Y3 ?5 D0 p: H7 z R-Z Michael C. Reed (Duke University)  2 T/ f3 t* J8 q3 D8 D6 Z Eric Renshaw (University of Strathclyde, Scotland) * k9 {! ^$ y# ^# a) UShigui Ruan (University of Miami)  ' y3 c: B, L5 m8 ?0 G Jonathan Rubin (University of  Pittiburgh)  - }$ ?# P4 J4 }+ [1 r& b& @ Björn Sandstede (Ohio State University) : Q1 k$ r, ~5 A' I( e% ASebastian Schreiber (College of William and Mary)   4 Y3 @+ x! y# b: @1 ~, X5 vStephen K Scott (University of Leeds, UK) 0 P0 |$ i4 @5 Z2 LJonathan Sherratt (Heriot-Watt University, Scotland) / x  D2 k: V+ U8 W. DKarl Sigmund (University of Vienna, Austria)   , m6 d) x8 I! M& `5 ?Brian D Sleeman (University of Leeds, UK) 4 I# A3 l# {, u2 U( n James Sneyd (Massey University, New Zealand)   - W' P. ~, L0 b1 h  e3 uHal Smith(Arizona State University)   9 n# b' w5 ^/ s7 U5 D- WJoseph Wai Hung So(U of Alberta, Canada)   ! w' z+ n& ?, B  oYasuhiro Takeuchi 3 G* K3 A5 @& A1 d. }& P7 a' O7 k! b$ eDavid Terman (Ohio State University) # Z( V4 Y4 a$ _0 l! g Peter Turchin (U Conn) . H& K7 p, U1 _8 MHorst Thieme(Arizona State U)   . W& ]* M$ W- A" h+ y; ^0 k" ^John Tyson (Virgina Tech) 9 ]) s. ~- \) ^5 T9 O5 W/ U. ^Glenn Vickers (University of Sheffield, UK) % B8 v% E. w# I0 k1 x Paul Waltman (Emory University)   % m1 j- E+ J2 a' BGlenn Webb(Vanderbilt University)   ; r  q: f, ]& z5 [6 q7 J* U1 Q. nMichael J Wilson  (University of Leeds, UK) 6 `0 S( b2 R4 M, f  |4 X; a# o! q8 s Jianhong Wu (York University, Canada)  9 i. o" {, s, V& j0 C0 V Alice Yew (Ohio State University)   0 s7 I. z; y: G% bAnatol M. Zhabotinsky (Brandais University) * V$ `" u3 @2 {, C3 TXingfu Zou (Memorial University, Canada)   . w8 g! h. s$ H) _( D5 U9 a" L ! `, L2 X# v2 N1 ^5 _, O Java Applets for direction field and phase plane- f, S! j/ y, P7 {0 H9 H& S * m& C- S# a' K) `% |0 r( ~ Java Applets for Euler's method 4 D& i; D# ~: K* b2 Z8 b, Q7 Q4 p* O 3 p! Y9 w, L$ m. D1 u) ZJava Applet for solving equations & m; ^5 k$ o2 H/ a% l( m' E5 P9 B- C# X$ b6 C  c7 m1 G5 S Articles about population - r4 Q( T; z2 \# V- w1 u4 e6 X/ d* x+ u6 O4 o Other math biology courses . e. J/ k8 F" m% Z* Y" i# |  s

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